Array 1 4643-6232 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWWO01000013.1 Neisseria meningitidis strain INS-Nm1168 NODE_13_length_58305_cov_76.2571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 4643 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 4709 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 4775 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 4841 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 4907 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 4973 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 5039 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 5105 36 100.0 66 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 5207 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 5273 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 5339 36 100.0 30 .................................... GCCTAGTTCCGGATTGTCAATCATCCCAGC 5405 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 5471 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTTCAAGAG 5537 36 100.0 30 .................................... TCTGTGCGTTTGGATGCGGATGAGGCGGGA 5603 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 5669 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 5735 36 100.0 30 .................................... AAACTTACCCCATTGATAAGGAAGCGGTTT 5801 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 5867 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 5933 36 100.0 30 .................................... GTGCGTAGTCGTATTGACGCTCGTGCTGAC 5999 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 6065 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 6131 36 100.0 30 .................................... ACCATGGTAATGATACAATCTATCATATGG 6197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================== ================== 24 36 99.9 32 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //