Array 1 339899-339623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 339898 30 100.0 31 .............................. ACTACACCGCCAGCAGGCAGGACGGCGGGGA 339837 30 100.0 31 .............................. CCGCCAACGTGCTCGCCGGCGAAGGGCTGGC 339776 30 96.7 32 .............................A GCAGCACCAGCACGCACGCGCCGGTGGCGGCC 339714 30 96.7 31 .............................T CGCGCCGGTTGAGAAGGCTGCGCATACGGCC 339653 30 83.3 0 ..........CA...C......C......A | G [339632] ========== ====== ====== ====== ============================== ================================ ================== 5 30 95.3 32 GTGCTCCCCGTGCACGCGGGGATGGTCCCG # Left flank : CCGACACGTCCGCTCCCGGGCCATGACGAAAGGAGTACGCGCCGACCGAGAGACCGAGCGCACCGGCCGGGCGCGACGAGGGCCGTCCGGCCGCCGGGACCGCGCCGCTGCCATCCCCGCGTCGCGGCCCGGTCATCACAGCGAGAGGAACGAGGAATGACCACCGCTCTTCCCGAACCGGCGACCACACCCCCTCTGGACACACTCTGGCTGGACCTCACGCGCAAATGCCCGCTGGAGTGCACCCACTGCTACAACGACTCCGGCCCCACCGGCGGCGGGATCGCGTCCCCCGCGATCACGGAGACCGTTGGGGCGGCTCGATCAAGCGATGGGGACAGGAGGGGAGCTTCGACCGGGCGGCGGCGCCTCCATTCGCGCTGCAGCGACCGGAACGGGGCCGGGGCGGAGCGAGCTGCAGCAGCGTGGGGCTTTTGTCGGTTTCTGGGGAAGTGAAGGAAAACGGCCTATAGGGTTGGCGAAGGCGCAGGTCATTCAGT # Right flank : GGTGGGGCGATGGCGCGTCGCCACCATGACCGGAAGCGGTCGGGGCCGGGTGGCGACGGGGTTCCGGCCTCCCTTAGAATCAGGCTTTGCCTGAAGGTCCCTGATCGGCGGAGCCGGTCGCCCGTGGAAGCGGTGAGAAGAGCGTGACGGTCACGGTACGGATCGCCTGGTGGCTTTGCGGCATGTTCCTGGCGCTGGGCATCGGCACTTGCGGTCTCGGCATCTGGCTCTGGGCGACCGTCGGCGGTAATGAGGGGATGTCCGCGCTCGTCCCCGGTGTGATCGCCCTGTTCTTCGGGATCCTTTACGTCCGCATGCCCTATTTCATCCTGACTCCGACGGAACTGATAGTGCCCATGATGCGGGGCCGACTGGCCCGGACCGGGATCCGTCCGCAGGCGCGCCTCGATGCCGGCGGCACACGGCTGACGATGACGGTGGGGCGGCGAACGACCACGTCGCTGCCGGTATATCGAGTCATGGCGCGCAGGAGCGACTGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2368851-2368230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2368850 37 100.0 37 ..................................... TTGTGTGTGCACCCCGGGGGCGCTGAGGGGGACGCAG 2368776 37 100.0 36 ..................................... CACCCGTGGGTGGCGGGGTCGATGTGGGCGACGTAG 2368703 37 100.0 35 ..................................... AGCTGGTGGACCCGGGCCGCGGCCCCGGTGCTCAA 2368631 37 100.0 36 ..................................... TTGGTGGGGCGCGAGCGGGGTGCGGGGCGGCGCAGG 2368558 37 94.6 36 ..............CC..................... GAGGAGATGCCGACCATCACCGCCGAGCAGTCCCAG 2368485 37 94.6 35 ..............CC..................... GTCTACCCCGTCTGCTTCCGCGACCGCACCGAGAT 2368413 37 100.0 37 ..................................... ACCGGGGCGCCGGGGTGGGCGTCGTAGTAGCGGGCCA 2368339 37 100.0 36 ..................................... CTAACCGGGCCGTATGGTGCTGCCGTGGGTACGGCT 2368266 37 97.3 0 ........T............................ | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.5 36 GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Left flank : TTCGACGTGGAGTTTGAAGGTGTGGGCGGCGGCCTCGGTGTCGAAGGGTTCGGACTGTCCGGCGCCTGCGCGGGTGCCCCCGAGGCGCCATTTGACCCAGTACCGGGTGTTTCCGCTGGTCAGTCGGCGTTTTTCGATGATTGCCATGGGGCGACCATCGCTCGGGGGCGCGCCAGGACGGAGGGAATCGGGCGGAGAACCTCCGAGGTTCTCGAAGGTTCTCCGGGCCGGCGGTGTTGCCGGTGTCCCCGGTGCGTGCAGGGGCGTCCGATCGCGTTCGGGGCCGTCGGTGGGAATCCATGTGTGGCGGGGAGATGGGCGGGTCGGCCAGTAGGCTGGGGTATTGGCGCAGCCCGTTGTGTGGCGGGCTTCGGAACCGGAAGCTCTCACGGATTCCCGGGGAGGTTCCGAAGTAGGTTCCTTCCTCGGTGGGTGGGTATGTCCGTGCTCGGTGCAGTGCGCAGCGGGGATCGTATGGGCGTTTCGCCTGCTCAGGCGCT # Right flank : CCGGCCCCGGCCATGCCCACCGTCAGGCTGTGCCGGGTGGCGGTCGCCGTCGGCGGCGGCCTCCACCCGCATCCGGCGCTGTTCAGGTGGCGGGCGCCGCCAGCGGGCAAGGTGCGGGGCGAGCCCTCGCAGGCTCACGGAGCCGGCCGGGCCATCCCGTGCACCCTGGTGCACCCTCGCCGCAGGGGGCGGATGACGGGATGGAGTCTGCACAGCGGGCCGCCGGCGCGAGGCCGTGCACCCTCGCGTGCACCCTGGGCATGAAAAAAGCCCTGCCTGTTCGATTTGATATCGCAGGTCAGGGCTCTTTTTCGTACAGAGCGGATGACGGGAATCGAACCCGCGCTATCAGCTTGGGAAGCTGAAGTTCTGCCATTGAACTACATCCGCGTCGCGTCCGAGGCTCTCGGGCCTCCGCCGACGTGTCCATGCTAGCGGATATGGCCGCCGTACAGGTAACCGGCGCCGGGCCTGCATGTGTGGGCGAGGCGGTAGGTTCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : GTGGCGGTCGCCGTCCGCGGCGGCCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 2422009-2421319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2422008 37 100.0 35 ..................................... CCCGGCGGCGGGCTGGTGTCCGACCTCACCCCGAT 2421936 37 100.0 36 ..................................... GTGTCACAGACCCCGCCCAACCAGCGCATCCTGGAC 2421863 37 100.0 35 ..................................... GCGTCGAGCGCGGCGGCGACCTCGGGGTCGGCGAG 2421791 37 100.0 36 ..................................... GTGGGTGTCGCACCAGCGGATCTGGCCGGTGGCGTC 2421718 37 100.0 36 ..................................... TCCACGACCAGCGCCCGGTAGCGGTGGTGCTCGGCG 2421645 37 100.0 35 ..................................... TGGACGTCTCCGAGGAAGTGCGTGGCCTCGGGGTG 2421573 37 100.0 36 ..................................... ACCCGGCCCTTCGCGCGCACCACCGACACGCCGAAG 2421500 37 100.0 36 ..................................... ACCCGGCCCTTCGCGCGCACCACCGACACGCCGAAG 2421427 37 100.0 35 ..................................... GGCCATCCAGCCCTGGACGCTGATCTCGCGCATCC 2421355 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 36 GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Left flank : TGCGGGTGGTGGAAAAGCCCGACGGCCCAACGGCTCAGGAACTGGAAACCCGTCACGGGAGCGGAAACCTCGCGCTGCTGGAAGGGCGGGTGCGAGCGGGGCGCGCGTTCCTGGATTACCTGCACGCATACCGGTGCCCACGTGGGACGGCTGACGAGCCGAAGCTGTCGTTGGCGTTGTCGTCCTATGCCCAGACCGCGCCGGTTCGGATCCGGCGGATCGACACCCCGGTCACCGATCTCGGAGCGCCTCTACCGTCAGCCTGCTGATGGTGGGCTATGGAATCGGAACCGTGTTGAAGATGTGTGGCAGGAAGGGGAGCGGGGCGGCCAGTAGTCTGGGGGCGTTGTGGTCGGCCGTGTGGCGGGCTTCGGAACCGGAAGCTCTCATGGTTTTCCGGGGAGGTTCCGAGGTAGGTTCCTGCCTGAGTGGGTGAGTATGTCTGTTCTCGTTGCGCTGTTCCGCGGGGATCGTATGAGCGTTTCGCCTGCTCAGGCGCT # Right flank : AACCACAAGGGCTTCGCCAAGGGCGGCATCGAGTGCTCGCGGACCGCCTGGCGGCCCAGGTCTGTGGGGCCCGCGTGGGAAAAGGTTCTTTTCGTGATTGTGTTGCTGGCTGACCTGGAGTAACGCGTTCATGGTCCTGGTCGCGCCGCAGACGGCGGCGCCGGATCGGGAGGTGGACTCATGGCGGTAACCACGACGGGGGCGGTTGGTGACACGGGCCCGTTGGGGCTCATGCGGCCGGTACCGCGCGGGTCGGGGGCGCCCCGGCGGGCGTTTTGCGGGCAGCGGGCCGCTGAACGCCCCACAGCGGCGACGGCGGCCGGGAGCCGCGCGGGGGCCGGGGCGGCGCCCGCCGATCGGCCCGGGCCCCAGGCGGCGCCCGCGGGGCGGGCTCGGGCCGGGTGGGATGCGGGGGCGGCGGTCCAGGCGTTGTTCGGGGAGCTGCGGCGGCTGGGGATGCGGCGGGTCTACGGCTCGGCAGACGTGAAGATGTCGGTGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 4 2427384-2427127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2427383 37 100.0 35 ..................................... TCCCGCCGGATCATGGGGGCGCACGCCACCACCAT 2427311 37 100.0 38 ..................................... ACTTCGGCCCGGTCGTCACCCCCGCGCCCAAGGGCGAG 2427236 37 100.0 36 ..................................... CGCTACCCGCCCAAGCGGCCCCGCAAGATGAGCCAG 2427163 36 75.7 0 ..............CC...C.......T..G-..GGG | C [2427133] ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 93.9 37 GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Left flank : TGCCGTTCGTCCAGTCCCGGCTGATGGCGCGGACCTTGCGCGAGGAACTGCCCGGATACCTGCCCTGGACGGTGTGAGATGGAACTGCTGGTCACCTACGACGTCGCCACTACAACCCCGGAGGGAGCCCAGCGCCTGCGGCAGGTCGCGAAGCTGTGCGAGGGGTATGGGATGCGGGTGCAGAAGTCGGTTTTCGAGGTGGTGTGCAGTGATGCCGACTGGGTGCGGTTGAACAATGCGTTCCAGCGCATCATCGATGATGAGGACGACAGTATCCGCGTGTATCGGATGGATCGGGGGTCGTTCAAGTCGGTGACGATCTTGGGGAGGGCCCGCCGGCTGCCGCATGATGATGCGCTGGTGCTGTAGTTGGGAACCGGAAGTGCTCATGGGATGCCGGGGAGGTTCCTAAGGATGTTTGGGGTGTCTTGGGTTTTCCTGTCCGGTTCCCATGCTTGGTTGGGCGCATGGCCTTCGGGTGTTTTCCCAGGTCGGGCGCT # Right flank : TAGCCAACGGCGTTCAGTGCCCGGGAGCCCCTGAATCATCCGCGTTCAGGGGCTCGGTGCCGGTGGAGCCTATGAGCCGGGATTGCTTAGTCTCGCCGCACCTTGAGTTCATGAAGGAACTGCGCCCAGGATTCTGCCGTGAAGCCGATATGGCCCAGTTCCGGGTGCTGCGTGTCGCGCATAAGGACGTCGGCGCCTTCGGCGACCTCGACACAGCTTCCCTGGGCGGTGCTGTAGCTGCTCTTGTGCCACTGGGGGTCATGCTGCGGTGTCATCGAGTTCTTCCTTGACCTTCCTGATGAAGTCGGCACTCTGCCGAGGAGACATGGCCTCCGCCTGGACAGCGCTGAAGATGGCAAGGCAGTGCTGCACCTTGACAGGGTCGTCCATGAAGATCTCGCCCTGCTGGTGCTCCGCCGATGCCGCCATGGGCCGGGTCGCGAACGAGTAGATGCGGAAGGCTCCGGAGGCGCCGGGATGGCACCCCGGGTTGGAGGGGA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 2757302-2757697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2757302 30 100.0 31 .............................. CTAGGGTGAAAAGCATGTCAAGGAGGGCAGC 2757363 30 96.7 31 .............................G TCCCGATACCGGCGTCGAGGTGGCGGTGCCC 2757424 30 100.0 31 .............................. GAAACCGGCGAAGCGATCGCATTGATGAACG 2757485 30 100.0 31 .............................. GGTCTCCCGCCCGCCAGGGCGTCGGCCTGGC 2757546 30 96.7 31 .............................G AAGGCGGCACGCCCGGCAGCGTCCCAGGCGT 2757607 29 93.3 31 .....-.......................G GCTGGTCAGACGTCGGATATAACATCCTCGT 2757667 30 80.0 0 A.......T...............A..GGA | A [2757690] ========== ====== ====== ====== ============================== =============================== ================== 7 30 95.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AGCCGAACCGGTCGACGGCGGAATCGAACTCGTGCTGACCTCCGGCCAGCGGGCACGCATCGAACCCGCCGCCGGCCCGGAACTGGAGGTCCTCTACGCCTGGGACACCTTCACCCTCGGGGCGCTCACCGCTGAAGAGGAAAGCGCCCTGGACGCGCTGCGCGAGGACAGCTGGACGGGACGGTTCGCTTGAGGGGATGAGCGCGTGCCGCCGTCGGCCTTGATTTTGCCGTCTGCTCACTCACGGCGTATGTCGGCACGATGGCGGTGTGCACTACGCGGTGGGTAGATGCAGCGCCCCCCGACGGCGATGCGCAACTGGACGCGTTGCGACGGCCCCGTGAAGAGTCGGATATCCTCCCGGCGTCTGTGCTGAAGGGGGACAAGGCATCCAAGCGCCGTCGTTTCGGAACAGGTGAGGCTATATGGGTGGTTTGTCGGATTCTCGGCGAGTGAATGAAAACGGCCTCTGGCGCTGGTAAACGCGCAGGTCATTCAGT # Right flank : ACTACTGCCTCCGCCACGCCGGCGTGGCGCGCCGAGCCTCGCGGACGTGGGGATGAACGGCCTGCACGATCAGCGTCCCCACATCATCCGGATCCGGCGCAGGCTCCACCCACGCCCGCACGTCGACGAACCCGTGTCGCTTCAGGATCTCCGCCCACATCTCGGGTTCGTACGCCCATCGGTATACCCACACCTGTCGGCCCCTGAATCCGTTGGCGTACATGCCCTGTATGCCGTAGGCGCCGGGAACGGCGGGCGCCTGCGCGAACACCAACCGACCGCCCGGAACGAGGCGCTCGCGGACGAGCGGCAGGAGGACGTCGGGGTCGGTGAACCAGACCGCGCCCCAGATCGAGAACGCCGCCTCCCACCGGTGCCGGGTGTCTGAGAGGTAATCGATCACGTCGGCGTGCGTGAACCGGGCGTTGGCGAGGTCGCCCCACCATTCGTGTGCGGCGCGCACGTGCTCGACAGACAGGTCCACTCCGGTCGCGTCGATG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2772503-2774611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 2772503 30 100.0 31 .............................. GATCATGGTCAATCTCCCAGGTGAAATCGGT 2772564 30 96.7 31 .............................C TGCTCGCGTTCCGCGGCGTGGAGGCGATCCG 2772625 30 96.7 31 .............................A ACGAGACCGACGCATGGTCGCGCGAGCACAC 2772686 30 96.7 31 .............................T GCCGGGCCTGTTCGTCCCCTTGGACGTCAAG 2772747 30 96.7 31 .............................T GCGGCCGACGGATCGAGCTTGCCGAGTTCAC 2772808 30 100.0 31 .............................. TCTCCGACGCCTCCGCCTGCGTGTCGTCCTC 2772869 30 96.7 31 .............................T GCCGGGCAACGCCTCGGCCGAGGAGCTGCAG 2772930 30 100.0 32 .............................. CCTGGCTACGCAGAGCAGCCGGGCGCCAGTAG 2772992 30 100.0 31 .............................. GCGCTTGCCGCAGGTCGACGTGCGGCGGCGC 2773053 30 100.0 31 .............................. AGGCCGCGCTCAACTCGCTGGCCACCGTGGT 2773114 30 100.0 31 .............................. GCGCGTCTCGGTCGTATCGGACGGTGACGTG 2773175 30 100.0 31 .............................. ACTACGAGGATGTGAAGGTCAACGAGTGGCG 2773236 30 96.7 31 .............................C GCTCCAGCCTGGCGAGGGTGTTGGGGGCGGC 2773297 30 96.7 31 .............................A TGACCAACCGCACCAGCGCGCCCCGCCGCGA 2773358 30 96.7 31 .............................C GGCCGGACACGTGCCAGAACACGCCCCCGGC 2773419 30 96.7 31 .............................C CCGACGGCCCCGCCCACTGGCTGCGTAAGAG 2773480 30 100.0 32 .............................. CGTCCTCGGGAGTGCGGCAGCTCATGCCGCCG 2773542 30 96.7 31 .............................A CATACCGGTAGACCGGCACGCGCGACCCCCT 2773603 30 100.0 31 .............................. TGCAGACCGTCCTGGGCAGCGGGAGGCGCCG 2773664 30 96.7 31 .............................C AGGAGTATCCGACGTCGTCCCACCCGCGGTC 2773725 30 96.7 31 .............................T GGAGCCAGCGGATCGGCTGCCGGGTCTGCCG 2773786 30 100.0 31 .............................. ACGACCCCGAGATCCCGGTGCGCACGACGGT 2773847 30 93.3 31 ............................TC ACCCCGCCATCGTGCGGGGTTTTCGCATGTC 2773908 30 96.7 31 .............................C GGGCGACTTCAACGAGTTCGTGGCTCCCGCC 2773969 30 96.7 31 .............................A GCGCTGGCGGCTGCGCACCGCCCTGTACCGC 2774030 30 96.7 31 .............................A TGGGCGCGCTCGTGATCATGGACTTTCCCGA 2774091 30 100.0 31 .............................. GCCGGACCATCGACCTGATCAGCATCGGCAT 2774152 30 96.7 31 .............................C ACTGAACCGCCCCGCTCGTCGGCCCCCGGCG 2774213 30 93.3 32 ............................AA CCTTGCCCGCCTGCCGGGTGGTGGCCGCGGCG 2774275 30 90.0 31 TGA........................... AGGAGGTGGACCAGCCGTGCTGACTCTGGCC 2774336 30 96.7 31 .............................C CCTTGCGTTCCCACGTTCGGGTCAACTTCCC 2774397 30 96.7 31 .............................C CCGCATACCCGCTGATGGCGCCGTGGTTCGG 2774458 30 96.7 31 .............................A CGTCGTCCCGGCTCGAATTCGAGGGGACGTT 2774519 29 90.0 34 .................-..........AT GACCAAATTGCATGTGAAAATCTATGGCAGAAAA 2774582 30 93.3 0 ............................GA | ========== ====== ====== ====== ============================== ================================== ================== 35 30 97.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CAGACCGACCGCGGCGGCGAAGTGGAATCCGGACGCAACTACGCCGACGGAGTCATCTGGTGACGGTCATCGTCCTCACCAACTGCCCGGCCGGTCTCCGCGGGTTCCTCACCCGCTGGCTGCTGGAGATATCGCCCGGCGTCTTCATCGGCGGCCCCTCCGCGCGCATCCGCGACATCCTGTGGGCCGAAGTGCGCGAGTACGCCGGCAACGGTCGCGCGCTACTCGCCTACAGCACCGACAACGAACAGGGCTACACGTTCGAGACCTTCGACCACAAGTGGCACCCGATCGACCACGAAGGCCTGACCCTGATCCGGCGCCCCAGCGAGGAAGCGGCTATCCCGCCGGCGTCCGCGCCCAAGGGGTGGAGCAAGGCGTCCAAGCGCCGCCGTTTCGGGAACCGGTGAGGCCGCATGGGTGGAATGGGTGGTTTGTCGGATTTTCGCGGAGTGAATGAAAACGGCCTCTGGCGCTGGTAAACGCGCAGGTCATTCAGT # Right flank : ATTCTCCCGGTCACCGTCGTAGTTGGTTGTTGCGCCGCCCTTCGCTTGTTTGGAAGGGCCGACTGCTTGCGCCTGCCGAAATCGGAGCGGACCCTGCCGACCATCTAGTAGCACTTGTCAAGGACGTCCACGTTGACCGAGAACCCGATCCGCACCCGTTTCGCGCCGTCGCCGACCGGCATGTTCCATGTCGGCAGTGCCCGTTCTGCCTTGTTCAACTGGGCGCTGGCCCGGCAGCAGGACGAGGGCAGGTTCGTGCTGCGCATCGAGGACACCGATGCCGCGCGCAACAAGCCGGAATGGACCGAGGGGATCCTGCAGGCGCTGACCTGGCTGGGCATCGGCGACGCCGATCCGCACTTCGAAGGCCCCTACTTCCAGTCGGACTACGCCGGAAAGCACCGCGAGACCGCCGAGCGGCTCTATCAGGAGGGGCGCGCCTACTACTGCGACTGCACCCGCGAGCAGGTGCAGCAGCGGCGCGACAATCCCAACCTGGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4197026-4198030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4197026 29 100.0 32 ............................. GCGCGCTGGACAGCCTCGGCATATCGGTGACC 4197087 29 100.0 32 ............................. TCGCAGGCCGCCGTCTGGCTGGCTTCCCAGGT 4197148 29 100.0 32 ............................. GGCGGTGTGGTCGGTGAGTGGCTCAGTGACAA 4197209 29 100.0 32 ............................. CCCGCACCTCCGTGGTGCAGGCGTGGCAGCAG 4197270 29 100.0 32 ............................. ACGGCAGCGTGACCGACGTCGGCCGGTTCGTC 4197331 29 100.0 32 ............................. AGGTCGGCGTCGGTGGTGGGGGCGCCGTAGGC 4197392 29 100.0 32 ............................. GCGGGGTCTTGCACCAGGGTGGCCCCGCCCAG 4197453 29 100.0 32 ............................. CGCCTCACAGCAAGATCAGGTTTACCGGCCTA 4197514 29 100.0 32 ............................. GGAAACCGTGAAGACACCCGCCTCCCCCACAC 4197575 29 100.0 32 ............................. TGCAACAAAGAGACCCGGAAGCGGATGGGCCT 4197636 29 100.0 32 ............................. GGGTGTCAGGTCGCTCCGGGGCGTGCAGCCGG 4197697 29 100.0 32 ............................. CCCTTCTCGGCGTCGGGCATCCACATGCGGAT 4197758 29 100.0 32 ............................. CCGGGCGAAATCGTCGACCTGGCCGAGGTCAG 4197819 29 100.0 32 ............................. TCTGACCCGCTCGCGCTTGTTGCCCAGCAACA 4197880 29 96.6 32 ............................T CCCGGGAAAGGGTCACACCCACGCCCGCACCC 4197941 29 100.0 32 ............................. ACGAGGCGGTACAGGCCGACCGGCGGCGCGTC 4198002 29 93.1 0 ..............TT............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GAAGGTCCCGCGCACGCGGGAGTGGACCG # Left flank : CGGGGGCGGCAGCGTGGGTGGCGGGGTCAACTACGGGGGCGGGGACGCGGCCCGAGCGGTGCCGGCGTCCGAGCTGGACGTGCCCGAGGGAGGCCACTGAGTATGGGGTCCATGGTCGTCATCACCACGACTGCGGTGCCCGCCCATGTTCGTGGCGCGTTGTCGCGGTGGATGGTGGAGCCTTCCACCGGTGTGTATGTGGGAACGATGAGTGCGCGCGTCCGCGACGAACTGTGGGCTGCGGTCAGCGCGTCGGTGGGGGACGGGGCGGCTGTGTGCCTGTGTCCCGCCGACAACGAGCAGGGGTTCGATGTGCGCACGGCTGGTGAGCGTCGGCGGGAGGTCGTGGATTGGGAGGGGATGATGCTGGTGCAGATGAATCCTCTCGCGTCGGCTGAAGTCGAGATGGAGCGGCAGGTTCCGGAGGGATGGTGACGCGTTTGCTGTCCAAGCGAAGGTTGCAACAAGGTAACGCTCGGCGTTTTCGCAGGTGAGGTGCT # Right flank : GCCCGCATCGTGGGCGATGTTGTTCCCGAACTCGAAGGGATTCGGAATGAAGTTGCTGCCAATCTAGCATTCAGAGAAAAATTGGACGGCAGAGAAAACTCGTTTGAAAACATTGATTCTACTCGAGGAGGTGCGCCTGAATGGCGGCTGCATCAGCAGCCGAACGCAACTGGGAGCAGCCGCTATGCAGTACTGCCCGAGCCCGCCACCCGAGACGATGCGAGGTCGTCGCCACCGTCGTCCCGTCTTTTCGGCCGCGCCCGCGGAGGTGCCGGCAGCGCGGGCGTGGATCGATCGGACGCTCAGGTCCACCGGCCGTCGCGACGACATAGGCCTGGTGGCCGACGAACTTCTGAGTAACGCCCTCACGCATGCGCCCCCTGCGCCGGGGGACGGCTATGACGCGGCTGTTCTCGTCGTCGAGGAAACCCCGAGTGGCCAGCGGGTCGTCGTGTGGAGCCGGTCGTCGGCGGCCACGGTCCCTGCAGCCCGGCGCACCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGTCCCGCGCACGCGGGAGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 4267817-4269309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLY010000001.1 Streptomonospora salina strain DSM 44593 Ga0415179_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4267817 29 100.0 32 ............................. GACAAGAGCGGCCCGGGCGCCGGGGCCTACGT 4267878 29 100.0 32 ............................. TCGATCCCGAACACCACCACGTCGTCGCAGGC 4267939 29 100.0 32 ............................. TTCCGCCACTCCCCAGCTCAAGGGCGGTTTGG 4268000 29 100.0 32 ............................. GCCGCCTGGTCGGCGGCCTCGGCCAGGCGCGC 4268061 29 100.0 32 ............................. CTCCTCGCGGTAGAGCCGGGCCAGGCGCAGGG 4268122 29 100.0 32 ............................. CTCAGCTCGATGTGCACCCCCGCCGAGCGGGC 4268183 29 100.0 32 ............................. AGGTCGGCCAGCTCGCCCCCAAGGACCTGGAC 4268244 29 100.0 32 ............................. TAGGAGGCACGCACCCGTGAGCACCGAGAACA 4268305 29 100.0 32 ............................. CAGCAGTGCGCATAATGAGCACTCCGTCGGTA 4268366 29 100.0 32 ............................. TCTGTCAGGACACCCTGACACGCGCAAGGGGA 4268427 29 100.0 32 ............................. CCTGCTCGACCAGTTCTGCGGACTGGGCGGCG 4268488 29 100.0 32 ............................. GTGCTCGGCGATCTCGGCGTCGGTCATGTCGT 4268549 29 100.0 32 ............................. GCGGGTACGCGCGCGTACGTGCGCGCGTACCC 4268610 29 100.0 32 ............................. AAGGACGACGTGATGACGTCGATGCGCTCCGG 4268671 29 100.0 32 ............................. CGCCGTGGGACTGGCTCGTCGAGTACGGCATC 4268732 29 100.0 32 ............................. CACGCATCGGCGATCGCCAGCGGGACGACCGA 4268793 29 100.0 32 ............................. ACGACGCGTCACGCACCGCGGGGGAGTACCTG 4268854 29 100.0 32 ............................. CCCTTCGGCGGGGCGTTCACCCTGGACCGCAA 4268915 29 100.0 32 ............................. TCAGCCAGCTCCAGATCCGTGGTGATCCACAT 4268976 29 100.0 32 ............................. TCCATGGCGGTTCCCCTTGAGGGCACGCTGAT 4269037 29 100.0 32 ............................. TCAGCCAGCTCCAGATCCGTGGTGATCCACAT 4269098 29 100.0 32 ............................. TCCATGGCGGTTCCCCTTGAGGGCACGCTGAT 4269159 29 100.0 32 ............................. TCAGCCAGCTCCAGATCCGTGGTGATCCACAT 4269220 29 100.0 32 ............................. TGTACGGTCATCGTCTGCTCAGCCATACGCCC 4269281 29 82.8 0 .............TT...A...G.T.... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 CCGAGCCCCACGGACGTGGGGATGGACCG # Left flank : GACCGCCTCGAGCCCGGATTCGCCTGGGTCCCGCGCTATGCGGCCCTGGTCGGCCCCTACGGCCACCGCGACGGTCCCGCTCTTGAGGAGATGGAGCGGCTGATCCGCCACGGTTTCGAGGACGTCCTGCTGCTGATGCCGGGCAGCAACCGCCGGGTCGGAGCCGTGCCGTCCCGCGCGTAGCTGGACTCGGGAACGGGCGGAGAGAGGGCGTCCTGACGGATATGTCCGGTGTTTTCTGGTTTGTCGGTTCGTAGTGTGAATCCCGATTCGTGTCACTGTCCGGGCCCGCGAGCCCACGGCAGCCGGACAGCGGCGGCCCGGTGGTTATGGTTGGCATTGCGGGTGGAGAGTGAGAGTCGCGCGCACGCGGGTCTGCGTCTGACGAGGTAGCCAGGAAGTGAGAACTGAGAGTGATTGTGTGATTACGACGTTGTCCGTCGGTGGCCGAATTCCGGTTAAGAACCGATAACGGCGTGCGTTTTCGCAGGTCGGTAAGT # Right flank : GTTCAAGTCACCGATGAGCTATCGATATCCGCCCGAGGGCCCGCCACGAGGGTCGTGCAGCGGCCGGCGTGGGACCGACGTGGGGCCATGGCAGGACCGGCGGAGGGGGCTCGGGGGAAAGGACACCCGGGTCGCTGCGGAACCGCCCGCTGGTCCGGGAGCCCGCTGACCTGCGGCGGCGACTGAGTCCGAACTTGAGAGCACACGTGGAGCACACGTGGGCCCCAAAGGAGGATCAAGCGAGGGCATGTAAGCCGCTCACCTGCAATAATGGGTGCACCTGGCAGGATTCGAACCTGCGGCCGTCGGATTAGAAGTTATCTGGTTTGAGGCCGACCGCCCCCGAATAGTGCCGCTACCTGCCATTTTATCCGTCGGCTCTCCGTCGGCAATGCCGCGACGTGACGCCGTGTGCCGCCCGTGCCCGTGGCAGCCGAGCGACGGTGGAGCACACATCTCCATAGGCTGCTATTGGACGATGAAAGCGAAGGCTGCAACAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGGACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //