Array 1 52461-53281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNP01000012.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N51280 N51280_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52461 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 52522 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 52583 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 52644 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 52705 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 52766 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 52827 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 52888 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 52949 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 53010 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 53071 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 53132 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 53193 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 53254 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69922-71599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNP01000012.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N51280 N51280_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69922 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 69983 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 70045 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 70106 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 70167 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 70228 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 70289 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 70350 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 70411 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 70472 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 70533 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 70594 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 70655 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 70716 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 70777 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 70838 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 70899 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 70960 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 71021 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 71082 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 71143 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 71204 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 71265 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 71326 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 71387 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 71448 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 71509 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 71570 29 93.1 0 A...........T................ | A [71596] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //