Array 1 1574926-1573976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJMWN010000001.1 Mycobacterium riyadhense isolate MR-226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================================= ================== 1574925 29 89.7 46 .....A......T.....C.......... CCAGCGGCGGCAGCGGCGGCGCCGGGGGCAGCGGTGGATCGCTCTA 1574850 29 89.7 43 ............G.....C.......C.. GTGCCGGCGGCATCGCCGGCAACGGCGGACCTGCTGGGCTGAT 1574778 29 89.7 46 ...............G..C....T..... CCGGACACGGCGTCGGTGGTGCGGGCGGTCAGGGTGGATTGCTCTA 1574703 29 100.0 43 ............................. GCGTTGGCGGCATCGGCGGTCAGGGCGGGGCGGCCGGGCTGAT 1574631 29 89.7 46 ............C.....C..T....... CAGGAAACGGCGACGGCGGTGTCGGGGGCCAGGGTGGATTGCTCTA 1574556 29 100.0 43 ............................. GCGTTGGCGGCATCGGCGGTCAGGGCGGGGCGGCCGGGCTGAT 1574484 29 93.1 46 ............C.....C.......... CAGGAAACGGCGACGGCGGCGACGGCGGCCTCGGCGGATGGCTCTA 1574409 29 100.0 43 ............................. GTGCAGGCGGGACCGCAGGTCAGGGCGGGGCGGCCGGGCTGAT 1574337 29 79.3 241 ...............A..C..A.TG...A GCGGCGGCGGCGACGGCGGCGACGGCGGCAGCGCCGGACTGCTGTACGGCCATGGCGGGGCCGGCGGCAATGGCGGGTCCGCCGCTATCGCCGGCCAAGCCGGCGGGGCCGGCGGGGGCGGCGGGTCGGCGTCGTTGTTTGGTCAGGGCGGTCACGGCGGGGCCGGCGGGACCGGGGCGGCCGGTCAGGCCGGCGGGCGCGGCGGTTACGGCGGTGCCGGTGGGTGGCTCGGCGGCAATGG 1574067 29 72.4 34 ...G.T......T..T..C...GTG.... GGGCCGGCCTCGAAGGCCTCGCCGCCGGAACCGG Deletion [1574005] 1574004 29 69.0 0 T..T.A......CT....C...GC....C | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================================= ================== 11 29 88.4 63 CGGCACCGGCGGAGCCGGGGGCAACGGCG # Left flank : TCGTCGTTTGTGATCGCGACGCCCGGATTCTTGATGGCGGCCACGCAGGACTTGACCACGATTGAGCAGGCGGTTGGGGCCGCCAATGCGACGGCGGCCGGCTCGACGACACGGGTGCTGGCCGCCGCCGAAGATGAGGTGTCGGCAGCGATCGCAAGGTTGTTTGGCGCCTACGGCTACGAATATCAGGCGCTGAGCGTGCAGGCGGCGGTGTTTCACGCCCAGTTTGTGCAGGCGCTGGATGCCGGTGCTCGGGCGTATGCGGCCATGGAGGCCGCCGCCGCCGCGCAGTTGCAGACCCTGGGGCAGGACGCGCTTGGCCTGATCAACGCCAACACCCAGGCGGTGCTGGGCCGCCCGTTGATCGGCAACGGCGCTGACGGGACGGCCGCCCGCCCCGACGGTGGGGCCGGCGGGCTGCTCTACGGCAACGGCGGCAACGGCTATTCCCCAGCGGTAGCCGGCGGTTCCGGTGGTAGGGGTGGGGCGGCCGGGCTCGT # Right flank : GGGCCCTGGTGGGCTGGTCAGGCGGGGCAGGTGGGGCTGGAGGCGCCGGCGGCGCGGGTGCTGACGGGGTCGCGGGTGCTCCCAATACGAGCGGTGTAGGCGCCGCGGGCGGCACCGGTGGCAATGGCGGCATCGGCGGCGTGGGTGGTGCATCCAGTGCGCTGCTGTTCGGTTCCGGTGGTGTCGGCGGTGTCGGCGGTGCCGGCGGGGTAGGCGGCTCGGGCGGCAACGGTCTTACCCAGGTCGGTCTCAATGGCGGCACCGGCGGCACGGGCGGGACGGGGGGTAATGCCGGGGCGGGCGGGGCTGGCGGGGCCGGAGGATTTTTCGGGACATCCGGGGATACGGGCGCCGCGGGCACCGGTGGTAGCGGCGGCGCCGGGGGCAATGGCGGCGACGCCGCGGGAGTGGGCCCGGGCGGCGCCGGTCTACGCGGCGGCGACGGCGGCCAAGGCGGTCAGGGCGGTAGCACGGGCCTCGGAGGCGTCAACGGTAACGGC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCACCGGCGGAGCCGGGGGCAACGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //