Array 1 2232-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_UENG01000002.1 Streptococcus intermedius B196 strain G1565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2231 36 100.0 30 .................................... AAATCAGCAACAGCCATTACAAGGCAACCT 2165 36 100.0 29 .................................... GTTGAGAATCTAGAAGCGCTGCATGCCGT 2100 36 100.0 31 .................................... CTATCAATCCGCTGTACCTTTTCTGTGCTTT 2033 36 100.0 30 .................................... ATTAATGAATTAGGAGAAGAAAATAATGAT 1967 36 100.0 31 .................................... TTATGAAAACGGTTGTTATAATAATTTTCGG 1900 36 100.0 30 .................................... ACAAAATCGCAATCAATTGACTTTTTATGA 1834 36 100.0 30 .................................... AGGCGTTGAGGCTCTCAATGTCAATGTCAG 1768 36 100.0 30 .................................... TAAACATTTTAAAACAAAGTTTAGAAGCGT 1702 36 100.0 30 .................................... GATGTCATTTGTCTACGGTGGTTTAAGTGG 1636 36 100.0 31 .................................... TTACACAATCAAAATCTAGCAATTTCTCTAT 1569 36 100.0 30 .................................... AATAAGTGACTTCTTTTGATGGTAAATTAC 1503 36 100.0 30 .................................... GTATTACTAGTTTAATATCACCACCATAAA 1437 36 100.0 30 .................................... ACTCTTTTTCAAATCTTTTACGATAGTTAT 1371 36 100.0 30 .................................... AATCTACATTGGAAAAGATTATTAATAATC 1305 36 100.0 30 .................................... AGTTAGAGGTTGTAACATGTAATTCGATAA 1239 36 100.0 30 .................................... TTATAGATAAGCCAAAACATGAAAAACAAG 1173 36 100.0 30 .................................... CAGTAACGGACACACCAAGCGTTGACTTAA 1107 36 100.0 30 .................................... TGCGGTCGTCGTACCAAGGTTCATATGTGG 1041 36 100.0 30 .................................... ATGGATTTGTCACAAAATGCAGAATTAATG 975 36 100.0 30 .................................... ATATTAGATGTAAAAGTTGGGTTTTTATAG 909 36 100.0 30 .................................... TGTATTGTATTGTTATTTGTTGATAAACAT 843 36 100.0 30 .................................... TGCGGTCGTCGTACCAAGGTTCATATGTAC 777 36 100.0 30 .................................... AGACATGTAAACCCTCACAAGAACGCTATT 711 36 100.0 30 .................................... ACAATTTTTCAGCCGAAGCGTTCGAAACTC 645 36 100.0 30 .................................... CGAGTTATTCTTTTCATAGCTTCTTCTGCA 579 36 100.0 30 .................................... TCCATATCTCGGCCAAATCATTTGGACTTA 513 36 100.0 30 .................................... TGGTACGTGGAATTTAGGATAAGTTCCCCA 447 36 100.0 30 .................................... TTGGTATAAATAAGTCTGATCTCATTGAGA 381 36 100.0 30 .................................... GGGCAGTTTATCCGCTTGCAACACTCGCAC 315 36 100.0 30 .................................... AGGAACGTAATACCAGAGATAGTACTTTAT 249 36 100.0 30 .................................... TTAATAATATAAATGTTGACAATTGGATTA 183 36 100.0 30 .................................... TAGGTAAAGCAATAGCGAGCACAAGGCGCG 117 36 100.0 30 .................................... ATTAAAGGATTGAATCCCTGCGGCAACCGC 51 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAATAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : CGCCACGTTAGCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8058-7429 **** Predicted by CRISPRDetect 2.4 *** >NZ_UENG01000010.1 Streptococcus intermedius B196 strain G1565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8057 36 100.0 30 .................................... TAGGTAAAGCAATAGCGAGCACAAGGCGCG 7991 36 100.0 30 .................................... ATTAAAGGATTGAATCCCTGCGGCAACCGC 7925 36 100.0 30 .................................... GCCACGTTAGCTTTGTGGATTAGAAACAGA 7859 36 100.0 30 .................................... GTAAAAAGTTCCAAGAAACTTGGGACGGCA 7793 36 100.0 30 .................................... GAACAAGCACACGCACACGGAAATCGATTT 7727 36 100.0 29 .................................... AAATGAGGGAAGAATGACAATGGCTATAG 7662 36 100.0 30 .................................... GTATCAAATGGGTACATTATTTCAAAACGT 7596 36 100.0 30 .................................... CCGGTTTATTGTTAGGTGGATTGTCTGGCA 7530 36 100.0 30 .................................... AAATTATTAAACGTAAAATGCCACGTCCTC 7464 35 77.8 0 ..................AA-..C.T.G.A.....T | C [7433] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : TTGACAATTGGATT # Right flank : TATAGAACTCATTATTGGGCATTATTTATGTAAAAGAAATTTAATCAAATAGTTATCTATGCAAGATATTAGTGGAATTGTAATTTAGGTTGAAATGTTTTATAATGAAAAGGAACAAGTAATATTAGGGGGATTTCTAATGGAGAGAAAAATAAAAAAATCAGTCGTTGCGACCGGCTTAGCTGCAACGACAATCATTTCAGGTAGTCTATCACATGCAGTAAATGCAGAAGAAGCAAAACCAAAATCCACTGAACCAAAGACATCTGAAAAAATTACAAAACCAGTTACAGAATCAGATATTCAATCAGCAAAATTGGAAGCAAATGCTGCGAAAGTTCAGAAAGATACGCAACAGAAAGTTGTAGATCAAGTAAAAGAGGATGTAAATACTTCAAAGGAAGCAGTAGCAAATAACAAGAAAGCCGTAGCAGATGCAGAAACAGAAAAAAATGCAGCGACCTCAGAAGTGATTAGAACTGCAAAAGAAAAAGTAAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //