Array 1 425641-422208 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQF01000001.1 Serratia marcescens strain 1673 NODE_1_length_584609_cov_30.0143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 425640 29 100.0 32 ............................. GCCTTTTTACCTTCGGTGAATTTGCTTTTGGC 425579 29 100.0 32 ............................. CGTACTACAACGGCACGTCAAAGGCCGCAGGG 425518 29 100.0 33 ............................. ATGCCAACGGCTTACCGCCTCACAGTATTTCGC 425456 29 100.0 32 ............................. GCTGCATTTTCGCATCCAATTAGTTGTCATAT 425395 29 100.0 32 ............................. GTAACGAATTTCTTTTGCAGCTTCGTCAGGGC 425334 29 100.0 32 ............................. GCATTTGGCGTTCGATATAGGTGTACGGTGTC 425273 29 100.0 32 ............................. GAACAACAGGGATCCACTAATGCCGCTGCCGT 425212 29 100.0 32 ............................. CGTCACCGAGTTACTCAGGTTGTCGTAGCCCT 425151 29 100.0 32 ............................. TAGCCGTCGCAACAAGCAACGCCGCCAAAAAT 425090 29 100.0 32 ............................. GATGTTCGATATTACCTGAATGGCATGTTCTT 425029 29 100.0 32 ............................. ATGGCCGACAGCAATATGCCGGTTGAAAACCA 424968 29 100.0 32 ............................. CTTACGTGGTCACGGCGAGCCGTTCGACCGTC 424907 29 100.0 32 ............................. TTTGTAGATAGATGCGATCGGCACTTCGGGCT 424846 29 100.0 32 ............................. CTGCTCCCCTGCAGTTCGCGCATTGCCTGAGA 424785 29 100.0 32 ............................. CTGCGCGGCGGGATGTTGTGGGAGGGGTCGCC 424724 29 100.0 32 ............................. CTGGTGGGGCTGGTAAGTCTGCTCGACGGCAT 424663 29 100.0 32 ............................. TCTGCCGGGCTGCCGCCGCTCAACGTCGAGGA 424602 29 100.0 32 ............................. AATATTAATAATGCCGGGTATGTCCAGCGGGC 424541 29 100.0 33 ............................. GATGGCGCCTACAATTGGGCAGGCAGCGCCAGC 424479 29 100.0 32 ............................. CGCACAACGGTGCGTTTTTCATAGCTGGCGTT 424418 29 100.0 32 ............................. TATCAATATACACTTGACGTCCTTGGGAGGTG 424357 29 100.0 33 ............................. CCGATCGCGCCGGCAACGATCTGGCCACACAGC 424295 29 100.0 32 ............................. CCATTCGATAACGCGAGTTAATTCGATTGAGT 424234 29 100.0 32 ............................. GTAGCTGAATGGCTATCCGAACAGGGATATTC 424173 29 100.0 32 ............................. GTAGCTGAATGGCTATCCGAACAGGGATATTC 424112 29 100.0 33 ............................. ATATATTTATGGAGCCTCGACAATGACACTTTC 424050 29 100.0 32 ............................. CTGGTGATCGAGCCAGCAAGATCATCGTCTGC 423989 29 100.0 32 ............................. CTCAAACCCCAAATCTCTGGCCATGGTCATGC 423928 29 100.0 32 ............................. TTGGCATTCGAACGCAGTTTGGGTTCTATGGG 423867 29 100.0 32 ............................. CGCGCGCCCAGTCCCAGCGCCTCGTTAGCGGT 423806 29 100.0 33 ............................. TGCCGTTTGCAGCGCTAATGTGAAGCTTACAGC 423744 29 100.0 33 ............................. TACAACGCATTGGTGACACGGCACACCATCAGC 423682 29 100.0 32 ............................. CCCTCGCCGAGAATATCGACGCTAACCAGCTG 423621 29 100.0 32 ............................. ATGTTCGCATTGAGGTGTTCGACGGCCAGAAT 423560 29 100.0 32 ............................. AAATGCGCGCCCGCACCGCAGCTGCTTACCGC 423499 29 100.0 32 ............................. CCTGCGCGTAGTGGATAAGGCGGCGCGCCGTG 423438 29 100.0 32 ............................. GTTGGTAATAACGGCATTTATAGCGTTATTCT 423377 29 100.0 32 ............................. TCGTTATCCGGATCGCCCATGTTGCACTTGAC 423316 29 100.0 32 ............................. TTGATGGATGTTGCATCGGGCGCTTTGGAGGA 423255 29 100.0 32 ............................. GCACGATTATCGCGCTATTACGGGCTGTTACA 423194 29 100.0 32 ............................. GAATTCGCGAGGGGATTCTCTATAGCTTCGGC 423133 29 100.0 33 ............................. ACTAATCCCCAGGTCAGCGGCGACAGGGCCGGC 423071 29 100.0 32 ............................. CTGGCGTTTCACATGACAGGCCGCGTGATGGT 423010 29 100.0 32 ............................. GAGGAAGAAGACGACGAAGCAGCCTTTACCGC 422949 29 100.0 32 ............................. GCCGCCAATTCTTTTTGCGTCAGGCCGAGTTG 422888 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 422827 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 422766 29 100.0 32 ............................. AGGTGTTCGGGCCGACAGACAACTGGCAGCGC 422705 29 100.0 32 ............................. CGATTATGAGACCCTTGATAGGGCTATATAAA 422644 29 100.0 32 ............................. GTGTCACGCTGTACAACCCGCGCACCATCGAA 422583 29 79.3 12 .................ACA.T.G....C CATACGCGGCAA C [422565] Deletion [422543] 422541 29 100.0 32 ............................. TCCACGGCCAGGCGCTGGGTGTGCAGGCTGTT 422480 29 100.0 32 ............................. CTGGCACGTTCAGAACGGAACCCCGTTGATGG 422419 29 100.0 32 ............................. CCCATGGTCACGAACTCGGCCGCGATGCCATT 422358 29 100.0 32 ............................. TAGATCGCATTGCATCCGGCGTTATGACAATA 422297 29 100.0 32 ............................. TTGATAAGATCGCTGTTGATATCGCACAGCAG 422236 29 82.8 0 ............T.........GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGACAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTTTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGTGATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATTGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGAAAAGGATTTCACCGAAGTGTATTTTAAAATTTGATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : TTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCTAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGTGGGGCAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAAACGACATCAGGCCGCCATAGCCAAGCGCGGTATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCTGTCTTGACGATAAAGGGTTATTTTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 432128-429045 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQF01000001.1 Serratia marcescens strain 1673 NODE_1_length_584609_cov_30.0143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 432127 29 100.0 32 ............................. GCGTTCGACTTCAGTGATTTCGATGCTCAAAA 432066 29 100.0 32 ............................. CGCATGCCCTCCTTTTCCTGCAGGAATTGGTC 432005 29 100.0 32 ............................. CAGATGCCCGATTTGCGGCACGGTTCCGAACG 431944 29 100.0 32 ............................. CCGATTTAACGTCCATTTCGGCGGTCGCTCGT 431883 29 100.0 32 ............................. AACATCTCCGACACGTCCGAAGGGAAACCGGG 431822 29 100.0 32 ............................. ACTGTCCTTTGTCGACAGCGAACCTAACCCGA 431761 29 100.0 32 ............................. CAGCGTTAAATCGCCTTTCGGCGTGTTGTCGG 431700 29 100.0 32 ............................. AAATGGAACGCCTGCAGGCACCGCTGCGCATA 431639 29 100.0 32 ............................. TTCGCCGCGCGCTGTGGGCAGCGTTGGAAAAG 431578 29 100.0 32 ............................. TAAATTTAACGTCCATTTCGGCGGCCGTTCGT 431517 29 100.0 32 ............................. GCCCGACATAATTAAGCCGATAATCACGCCCC 431456 29 100.0 32 ............................. CACTGCGTTTACATCGATGAAGTCGACGCCAT 431395 29 100.0 32 ............................. GCATTGAGCTGGTATTAGAAAGTAATGGCTCT 431334 29 100.0 32 ............................. CGCTATATCGCCTTGGGTTCCTGAAATTGTGG 431273 29 100.0 32 ............................. GGAGTTGGCAATCTGCTGAATCTGAACGATGT 431212 29 100.0 33 ............................. CGAATCATGTATCGGATTACCTATCTATGTGAA 431150 29 100.0 32 ............................. CGAGCCGAGCAGTATCACCCGGTTATTCCGAT 431089 29 100.0 32 ............................. GACTTTCTTACCTGTTATCGGGATGAAGTCGT 431028 29 100.0 32 ............................. GGTTGCTACGCAGCAAGACCTTCTGGGGGGCA 430967 29 100.0 32 ............................. CCATCGAGGTGCCGCGCGACCCGCAGCAGGCC 430906 29 100.0 32 ............................. TAGACATTCCCCGGCTCCTTAGCGGTTAACGT 430845 29 100.0 32 ............................. CTGCTCGAGTTCTCAGTGGGCCGCAGCATGAC 430784 29 100.0 32 ............................. TTTAGGACTGACGGCCGATCGCCGTTTGTTTA 430723 29 100.0 32 ............................. CATTTAACGAGGTATGACCAATGGCAGTTTTT 430662 29 100.0 32 ............................. CAGGCAGGCAAAGAATTGGGCACGGTGATCGA 430601 29 100.0 32 ............................. GTGCGGAAATTTATCGAGCTGCTGCCGCCCGA 430540 29 100.0 33 ............................. GAACTGCGCATTTCCGGCATGATCCCGTTTAGC 430478 29 100.0 32 ............................. CCGGCTATGAGCTGTGCAAGCTGATTTACCTT 430417 29 100.0 32 ............................. GTGTTGAACGTGTCGAAGTTGCTCAACCGGCC 430356 29 100.0 32 ............................. TTAAGGGGCGATCTCGCCGCCGCGCACCGGCT 430295 29 100.0 32 ............................. ATCAACCCGCTATTTGCACAATTGCACAAGGC 430234 29 100.0 32 ............................. GCTTCCTCGATGTTGCCGGCGTCGATATTCCA 430173 29 100.0 32 ............................. CTTTTGCGCATTACCTGAAACGACAATCACCG 430112 29 100.0 32 ............................. TCGTTAATGTCGTCCACGATTTCTTCGGTGAT 430051 29 100.0 33 ............................. CAATACGCCTCGTTCATGATGTACGCCCCGGTC 429989 29 100.0 32 ............................. ATCGTAGAAAACCCACGCCGGATTATTTGTCC 429928 29 100.0 32 ............................. CTCGCCATTGTCTCCGTGGAGAAAACCTCATC 429867 29 100.0 32 ............................. GCGGATACGTACTCTTGCGAGTAGAGGGGGGA 429806 29 100.0 32 ............................. CAATGTCGCGCAGGAAACTGTTAACAACCTGA 429745 29 100.0 32 ............................. GATAAGGCAGGTAATATCATTGCCGGTGCTAC 429684 29 100.0 32 ............................. GAAGTATATGAAGGCGTCGTCAGGCTGACGAA 429623 29 100.0 32 ............................. GACTCGTTGGGCCGCTATATCCTCGCCAATCC 429562 29 100.0 32 ............................. TCAGTGAGCAGAATGCGGCCGCGACACTTGCT 429501 29 100.0 32 ............................. ATCGTCAATTCCAACGGCACGCAGGTGATCGA 429440 29 100.0 32 ............................. TAGACATTCCCCGGCTCCTTAGCGGTTAACGT 429379 29 100.0 32 ............................. TGTTCCCGGGTGGTTCCGTCCCTGACTTGCGC 429318 29 100.0 32 ............................. GCGTTTGCCGGCTTCAGCGACTGCTGCAAGGA 429257 29 100.0 32 ............................. CCCCAGGCGCGCCGTGAAGTTCTGGTAACTGT 429196 29 100.0 32 ............................. CGCTCAGACGTTTCTGGAGTGTCTCGTGGCGT 429135 29 96.6 32 ............C................ CAATTATGCCTTGTACGGCGACATGTCGGCAC 429074 29 82.8 0 ............C............CGAT | C [429049] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGGTTCTGGCTGCGGGGGAAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCGGAACCTGTTTCGTTAGGTGATGCGGGTCACAGGAGCCGTAACTGATGGGCATGCTGGTTGTCGTGACGGAAAACATCCCTCCCCGGCTACGAGGCCGGTTGGCCGTGTGGCTATTGGAGGTTCGGGCGGGGGTGTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACTGCCTTGGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGACGTGAGCCGGTAGATCTCGATGGGTTAAGGCTGGTCTCTTTCTTCCCCATTGAAAATCAGTAAGTTATCGATCTTTAAAAATATGGAAAAGTTGGTGGAATTTTAGAGGCTTAAAAACTCAAGTTATAACAATTAGTTAATCTTAGA # Right flank : TTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTAAATACCGGCGGCATTTAAAAGTAAAACGCTCTCATATCACCCCACCAACTCCAGCCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGTGTCTCGGCACCCTGCGGCGACAGCCGCACGATGTCCACCAGTCCCTGCATGCTCGGGAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGCGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCATTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAAGCCCAGCTCGTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 442121-441726 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQF01000001.1 Serratia marcescens strain 1673 NODE_1_length_584609_cov_30.0143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442120 29 100.0 32 ............................. TGTGTCTTTCAACCACCGGCCAATGCAGCGCA 442059 29 100.0 32 ............................. CTCACACCCACAGTACGCGCACCGGCCGCCGA 441998 29 100.0 32 ............................. GTGAGATAAAAACGCCGGTAGTTAACGCGGTC 441937 29 100.0 32 ............................. TGAACATGATTTCTTCTCCTGGGTCTTCGGGT 441876 29 96.6 32 ............................A CCCGCCGGGCATCGCTTTGTCTGAAATAAGGA 441815 29 100.0 32 ............................. CGCCTGCATCCGCCGCCACAACTGAGTTTTTG 441754 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAAGTGTGGGGTGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGACGGGCGTAGGGGGGAGTATCTTGTTGTTATAGCGTGAAAATTCGGTGATTCAGCTTTATTGCTATAGATGGTTTTTTTATTTATTAGATTTCAAAGAGTTATGTGACTGCCCCGATGCTTAAATCGCGGTGAAATCTCGTAGATGTTGAAATCCATTTAATTCAATTAGATATATTTATA # Right flank : GGCGCGACAACGAAGCCTACCGCGGTATTAGCGTGTTCCTTACGCAAGTGTGGGGAAGTAAACGCATCAAGAGATATAATAATTCAAATGAAATAATACCATGCTAATTATATTAAGTGGTATAAGGAGTTTTTGTCTTATTTAAGAAGCTATATGAAATTTAAATTAATATCATTGCGCTTTGATTTTACTGTTGTGAGCTTAATTGGCTTTTTGTGTTTTCGAATAAAATATAAGTACCTTTAGCCTGATGGAAGTGCTAAAGATAACAAGGCATTATTTATATCTAAACGGGATTGTTTATGGGAAGTGATATCCCTGACTATATGCGCTACTGGGGAAAAGCAAAAAGAGCTGACTTACCCGGAGAGAGTGACGATTACCACCTATTAGCTTATCACTGCCTGGATGTTGCTGCTTGCGGGTACCAGATGGTGATTGATAATCGTTTTCATGCCGCCGATATTCTGGCAGAGATAGGTTTCTCTCGTGCCGATGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //