Array 1 473093-474036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026980.1 Pectobacterium parmentieri strain IFB5441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 473093 29 100.0 32 ............................. CCGATTCAAGGGCAGATGCGCGGTCTATTGTT 473154 29 100.0 32 ............................. CATTTCAGACCCGAATTTAAGAGCCGCTTGGT 473215 29 100.0 32 ............................. TTGTATGCAATTAGCGACCCGTAAAACCCGCC 473276 29 100.0 32 ............................. GGCTTCACATGGCACAAAACAAATCGGCGCAA 473337 29 100.0 32 ............................. TAAAACGAAATGGAATACAAGGAAATGGGATG 473398 29 100.0 32 ............................. GATGAGCAAATGGAAACGATCAACTATAACGG 473459 29 100.0 32 ............................. AATTACCAGATGAGGCGTATGAGTATGGGGAT 473520 29 100.0 32 ............................. ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG 473581 29 100.0 32 ............................. TCGTCGATTCAATGAAGGCGTATGGCGGAATC 473642 29 100.0 32 ............................. GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG 473703 29 100.0 32 ............................. AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT 473764 29 100.0 32 ............................. TTATTTAGTGGAATTCGGCCTGACGCCAGCGG 473825 29 100.0 32 ............................. CCAATGGCACCGGGGATAGATGTAATATCAGA 473886 29 100.0 32 ............................. CCACTCTGCGCCGCATTGGTGCTAATACAGAT 473947 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 474008 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGAGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 475906-476178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026980.1 Pectobacterium parmentieri strain IFB5441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 475906 29 100.0 32 ............................. CATGGATAAGAGCGACGTAGGAACGCAATTTG 475967 29 100.0 32 ............................. CTATCGTTTGCGAACGTGCATCCTTGCCCGTA 476028 29 100.0 32 ............................. CGTTACTACGCAGTGATGGGAATATTTCTGGC 476089 29 100.0 32 ............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC 476150 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGG # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4010358-4010626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026980.1 Pectobacterium parmentieri strain IFB5441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4010358 28 100.0 32 ............................ AACATCGCCACGGCGAAAAGTGTGTTCATGGC 4010418 28 100.0 32 ............................ TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA 4010478 28 100.0 32 ............................ ATCTACGAAGCTGATTATTGGTATGGGCCGCG 4010538 28 100.0 32 ............................ TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT 4010598 28 89.3 0 ............GC..........A... | G [4010624] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4027854-4031006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026980.1 Pectobacterium parmentieri strain IFB5441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4027854 28 100.0 32 ............................ GGCGACTACTCAGCGGCTGAAGTCAGTGGATC 4027914 28 100.0 32 ............................ CTGTCAGCGCCCAGAACGCGATCATTAACGTT 4027974 28 100.0 32 ............................ GGAAGGTGATTATCTAACAGAAGAAATGAGTC 4028034 28 100.0 32 ............................ GCTGAGTAGTCGCCGGTGTTGCTGGCCGCTGA 4028094 28 100.0 32 ............................ ATCTCGGAGAAATTGACGCAGACGGTGAGAAT 4028154 28 100.0 32 ............................ GTGAAAAATCATCAAAAAATGATTGAGGATTT 4028214 28 100.0 32 ............................ GCTGAGTAGTCGCCGGTGTTGCTGGCCGCTGA 4028274 28 100.0 32 ............................ AATGGTGACGCGAGTCAGAAAAGCGAGGGCCG 4028334 28 100.0 32 ............................ AGCCACGCATCCAGATACATCGGGCAGTCAGG 4028394 28 100.0 32 ............................ CAGATCACGGCGGTTTTGTTCTTGCGCCATGT 4028454 28 100.0 32 ............................ AATTCCACTGGAAAAACTGACAGCATTTACAA 4028514 28 100.0 32 ............................ TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC 4028574 28 100.0 32 ............................ CGTCATCAACATCTACGCCGACGGTTCATTTA 4028634 28 100.0 32 ............................ TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA 4028694 28 100.0 32 ............................ CGTTTGCGGATTTTTTCATTGCATCGCTGACA 4028754 28 100.0 32 ............................ GTCCGGACGGCAATCATTTTAGCATCGAGCAC 4028814 28 100.0 32 ............................ ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT 4028874 28 100.0 32 ............................ AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA 4028934 28 100.0 33 ............................ CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA 4028995 28 100.0 32 ............................ TGCTAACGCGGAAATTTGACCGAATGAGGGGG 4029055 28 100.0 32 ............................ ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC 4029115 28 100.0 32 ............................ GATTGACATACGCACAGGCTGTTTACTGGATT 4029175 28 100.0 33 ............................ CACCGACAGACAGATTATCCGGCAGACTGGTGA 4029236 28 100.0 32 ............................ ACGAAACAATAAACCCATTAATGGTATAAGTT 4029296 28 100.0 32 ............................ CATGTCATTTTCACCTGAGCGTTAGCATTGTT 4029356 28 96.4 32 .............T.............. TACGCGATGACGCTGCCCGATAGTGCCGCGTT 4029416 28 96.4 32 .............T.............. GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG 4029476 28 96.4 32 .............T.............. GCTGCGACGCCTCGGCAGCCGACACCCGCATC 4029536 28 96.4 32 .............T.............. GAAGTCACGCTGGAGTTTGACGATCTGCCCGA 4029596 28 96.4 32 .............T.............. AGCTTGTGCGCGATGGCATAGCGGGCAATCTC 4029656 28 96.4 32 .............T.............. GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC 4029716 28 96.4 32 .............T.............. GCAGATACGAATACCAACTTGACCCACTACTA 4029776 28 96.4 33 .............T.............. CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG 4029837 28 96.4 32 .............T.............. AAGGTGCCGAGCCTCTTGACCGATAATGACTT 4029897 28 96.4 32 .............T.............. CGCTAACGTGGGGAAATATGACTCAGTCGTCC 4029957 28 96.4 32 .............T.............. AATCCCATAAAACAAAAGCCCCTGCATTTCTG 4030017 28 96.4 32 .............T.............. AGTGAATACCACGCCACCGACAGGTGGTTTTT 4030077 28 96.4 32 .............T.............. TAGGCGCTTGCTGGCATCCGGCACGTTAAATA 4030137 28 96.4 32 .............T.............. TTCAATTCGCCGACTTATTAGAGCTAACGGAA 4030197 28 96.4 32 .............T.............. AATATTAATACAGGACAACCGACATATATCAA 4030257 28 96.4 32 .............T.............. TGTGATGTAATAACTGAGTCCGGTCACGGCGA 4030317 28 96.4 32 .............T.............. AGATACCGAGCCCCTTGACTGCAATTTAGTGC 4030377 28 96.4 32 .............T.............. AGAAATACCCTATGTCATTCTGGATAAATCAA 4030437 28 96.4 32 .............T.............. CTGGTCGAATAGCAGGGATAACCGGCAATGTC 4030497 28 96.4 32 .............T.............. AGACAAAGATTATTGCCTGATATTCGATCACT 4030557 28 96.4 32 .............T.............. GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC 4030617 28 100.0 32 ............................ CAAATCGGCGTTCGACTCCCACGCATCGGTTT 4030677 28 96.4 32 .............T.............. ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG 4030737 28 96.4 32 .............T.............. TGTACTCACGCCCACGATCATCATTGTACAAA 4030797 28 100.0 34 ............................ GGCGCGACCGTGTTCTAGACGATTTACGGGACAC 4030859 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 4030919 28 100.0 32 ............................ GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 4030979 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================== ================== 53 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //