Array 1 108024-106360 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCM01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2697 NODE_1_length_460244_cov_4.10218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108023 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107962 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107901 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107840 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107773 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107712 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107651 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107590 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107529 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107468 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107407 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107346 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107285 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107224 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107163 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107102 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107041 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106980 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106919 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106816 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106755 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106694 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106633 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106572 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106511 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106450 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106389 29 96.6 0 A............................ | A [106362] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125408-124282 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCM01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2697 NODE_1_length_460244_cov_4.10218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125407 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125346 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125285 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125224 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125163 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125102 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125041 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124980 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124919 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124858 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124797 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124736 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124675 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124614 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124553 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124492 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124431 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124370 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124309 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //