Array 1 1726650-1725909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023777.1 Chitinophaga caeni strain 13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1726649 47 89.4 30 AAG....G..C.................................... TCATCGGGCTGGTCATCGCCGCCCTCCCTC CA,C,A [1726634,1726642,1726644] 1726568 47 100.0 30 ............................................... TAAATTCGTTCCCGAAAACGCTCCAAATTT 1726491 47 100.0 30 ............................................... AGCTGCCGTAATGCGCCGCTAACCATACCA 1726414 47 100.0 29 ............................................... ACCTATCGCTTTCTTCCTTTACTTTATCA 1726338 47 100.0 30 ............................................... GCGCTTACATTAATTGCATATACAGACATA 1726261 47 100.0 29 ............................................... CTGCTAGAAATTGATTTTAAGGGGCTTGC 1726185 47 100.0 30 ............................................... TCTAGAATTAGTTTATACCGTGGCTGAAAA 1726108 47 100.0 30 ............................................... AAGTTGCGTATAGGTGCCATCACAAAGGAC 1726031 47 100.0 29 ............................................... GCAAAAGCAATTAATCCCCTTAACCTTGA 1725955 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 98.9 30 GTTGTGATTTGCTTTCAAATTTTTCTGTAGCTTAGTGCTAACACAAC # Left flank : TCTTCAACTCCCTTGCAAAGCACTTGCCTGTACAGGGAAAGTTTTGATGGTTTTCTTATTGACCAGGCATAATAGCCACTACGGCTTACTTTGAACACCTTGCACATCTTCTCGACATCAAATTCTGCCTGATGGTCCTTTATGAACCTGAATATTTGTTGTCTTCCCTGGAGAAAATGCTCACTGCCTTTTTTAGTATCCGATTTTCCAATTCTGCTTCCTGGAGTGCTTTCTTCAGGGCCTGGATTTCCTTTTGCTCCGGTGTCAGATCCTGTTTTCCATTGCCAGGAAAACTACGGGTGTCATGTACACTGAACTCCCTGGTCCAGCGACGAAGCATTTCCGCAGCTATACCCAATTCTTTTGCAACAGTTACGGCTGGCTTGCCACTTCTGCGCAATTCTACTGCCATCAGTTTGAAGGATTTATCATAACTCCTTCTTTCTTTTTTACTCATTGTATTCAAAGTTAAGGAAAGAGCTTAACTATATGTCCACTCA # Right flank : ACAATCTTTCTAATTGATTGATAACAATATAGTTAGATTGTATTTTAGGATGAAAAAAATGGCTTTAGGCTTCATTTTTTTCATCCTATTTTAAAATAATTCAAGTTGCTGTAAGGTTGGAGGTGGGTCTATACCTACTTTTCCCCGGAAGATTTCGAGCATAGAAAATTGCTTATCCGTGACGCACATAATGCCAACATGTCCCTTGGGTGGCAATATCCCCTTTACTCTTTTCATATGTACATCCGCATTTTCCTTGCTGTTGCAATGCCTGATATAAATACTGAATTGAAACATCGCGAAACCATCAGATAATATTTGTTTACGGAACTTCGCATAATTTTTACGATCCCGTTTGGTTTCGGTAGGGAGGTCAAAAAATACTAGAATCCACATAACTCTATATGCGCTATAACGTGAGTTCATACTTTTTCGGGCTTTAAATAAGCTCCGGATAAATAATTTTGCGCGCTGATCCTTCAAAACATTTCGCCAGGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTTTTCTGTAGCTTAGTGCTAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 1729524-1727943 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023777.1 Chitinophaga caeni strain 13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1729523 47 91.5 30 A.CC.T......................................... GTCGAACATCCTCGCGTAGTAACCGCGTTA 1729446 47 100.0 30 ............................................... AAATAGGAAAACACCCCAACACAGCGATCG 1729369 47 100.0 29 ............................................... AATTAACATCCTGGGCATTAAAGGCGTTG 1729293 47 100.0 29 ............................................... CTTGGAAAGGCGTACAACATTCCAAGTGA 1729217 47 100.0 30 ............................................... GGAGCAATGGATATACCTCTACTGCGTATT 1729140 47 100.0 28 ............................................... CGGTACCTGAAGATGATTACATGATGGT 1729065 47 100.0 29 ............................................... GTGGTCATTTGATTCTAATTCGAAACTTT 1728989 47 100.0 30 ............................................... AATTGTACTAGACGTGCCTGATGCTTCCGT 1728912 47 100.0 30 ............................................... AATTTTAGCGATTACTGCTTCGTGACGGCT 1728835 47 100.0 30 ............................................... CATCTGGTAAAAAGCATTGTCATTATGATA 1728758 47 100.0 30 ............................................... TTAATTTTTATTTTAGGAAATACAGGCGCC 1728681 47 100.0 30 ............................................... ACAATTTGTAACATAAATCCACGTAGCTAG 1728604 47 100.0 30 ............................................... GGAACTAACCGTCTATCACCTACAGGGTTA 1728527 47 100.0 30 ............................................... CTCTAACATAGTTTTTATCATTTAATTGTC 1728450 47 100.0 30 ............................................... GTTGGCAAGAAATATTCATTGAACTCAGTA 1728373 47 100.0 30 ............................................... GAGCAAAGCGGCAAATTGGTTGAATGGAGC 1728296 47 100.0 30 ............................................... AATTTATCATCAAGGCAAATAAATGAGATA 1728219 47 100.0 30 ............................................... ATTTAGGTCTAAAATATCAAAAACATCTTT 1728142 47 100.0 30 ............................................... CGACTCAGATGTGGGACGAGGCTTGCGCTT 1728065 47 100.0 29 ............................................... CTTTAAATGACGAACCCCTTGATTTTACC 1727989 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.6 30 GTTGTGATTTGCTTTCAAATTTTTCTGTAGCTTAGTGCTAACACAAC # Left flank : CTAATGCTTCAGGACTTAGGTTCAGCATTTCACACACTTGTTCCTGGAAAATATCCTGGAGGCTGTGTAGTTCGTCATTTAATAATTTCAACACGTTAATGTTGACCGAACGCTGGTGCATCGTGTTCATGGTTTCTGATTTTTTGGAAGTTAATGAATGAATTTAATTTTCAGTGAAGGTATGGATGGTTCATAGAGGCGACAACCGCATAGGTACGGTTATAGATAGAACTGATAGGTTTGATGTGATTGGTTTCAATTTTTTATGACTGCGAATGATGCAACACAGTACGAGAATAAGCTATTTCAATGAAATGAGACGATATGAGATGAATAGAGACTATAAGTGATCCTAACCTGATTTTTAACCAAACTGTTTAATGCTTCAAAATCCTCCAAAAGATTCGACATTTCCCCTCCCTTTTCCACAAAAGCGGGAATAGTACAGTCAAATGTATTGTTCCCATTTTTATTTTCTGCTCCTACAAGATTTTTACTTG # Right flank : TTGCCTGGCATCTTACGGGATGCGAAGCGGGTTGTGATTTGCTTTTGGATTTGCAACAAAAAAATGGACAACTTATTAAGCTGCTTTTTTTAGAATAGATTTACTAAATTCTTCGGGTGGCAAATACCCTAATATTGAATGCCTTCGCTGCCTGTTATACCATATTTCGATGAACTCAAACAGCTCTTTTTTTGCGACTTCTACTGAATCATATACAGTATGGTGGCCGGTTTCTGATTTAAGTATCTTGAAGAAGTTCTCCATTACAGCATTATCCCAGCAGTTGCCCTTTCTACTCATACTCTGTTGTACAGAGTTGCCTTTTAGCAGATCTCTGAACTCCTCACTGGCATACTGTACACCTCTGTCTGAGTGAAAAACCATATTGGGTGCCACGGATCTATTTCTAATCGCCATATTCCAGGCAGCAACAGTAGTCTCCCTGGTTGTCATACCTGTACTCATGGACCATCCAACAATCCTTCTGTCAAACAGGTCCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTTTTCTGTAGCTTAGTGCTAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //