Array 1 14406-13248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBKJ01000036.1 Streptococcus agalactiae strain DK-B-USS-196 ctg7180000002820, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14405 36 100.0 30 .................................... AATGAATTGTTCTACTCCATTAAACGGGAT 14339 36 100.0 30 .................................... CAAATCCCGCAGAGGGCGGTAGTTTTTAAT 14273 36 100.0 30 .................................... GGTGAAGATTTTATATCAAATAAAGCTAAA 14207 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGT 14141 36 100.0 30 .................................... TTGTTAGTCATGATACTGATTGGATGAATG 14075 36 100.0 30 .................................... CAACACAGCTGTAACGCTTTTGGTATTACT 14009 36 100.0 30 .................................... CATAAAATCTAAAAAAGAACTGTCTAATTT 13943 36 100.0 30 .................................... CTTTTTCCCAACCAAACCTAGCAATAAGAA 13877 36 100.0 30 .................................... CATTTGATGCGTCAGAAGTGGCAATGCTAG 13811 36 100.0 30 .................................... ATGAAAACCAAGAACCTGTTGTATCAGCGA 13745 36 100.0 30 .................................... TTCTGCAAAAGATTTATCGTTAAACTCTGC 13679 36 100.0 30 .................................... ATGTTTTTAAGAAATGTTCGTCTATTAAGC 13613 36 97.2 30 ..............T..................... ATAAAATAGCGGAACATAACAAGATGATAT 13547 36 97.2 30 ..............T..................... TAAAGGAGTAATGATATAGTCTGAACTCTA 13481 36 97.2 30 ..............T..................... CAAGGACAAAAAACTTACTTTGGAATGGAC 13415 36 97.2 30 ..............T..................... TTCCGTTGCCAATTGTTAACAAGTAGTTGT 13349 36 100.0 30 .................................... AAATGCGAATAGCTTTTCCACTATCTGATA 13283 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCAATGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AGAGTTAACTAATTTTCATGCTATCACAAAGTTTTAGAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTTAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAAGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGAATCTCACCTATTAATATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //