Array 1 337082-338687 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS264546.1 Parabacteroides merdae ATCC 43184 Scfld0286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 337082 32 100.0 33 ................................ AATCTCGATCATTTGCCGACAAGATCGCCTATC 337147 32 100.0 32 ................................ CACAGTGCCACCTTCCGAATCTGTCACATTGA 337211 32 100.0 33 ................................ ATCTTTTACAGGGACTTCCAACCCAAACACAGG 337276 32 100.0 33 ................................ CAAGACATTGCGACATTTCAAGTCTTGTCCCAT 337341 32 100.0 32 ................................ TTGATTTTGCGAAACACATAAGAAGCATATAC 337405 32 100.0 33 ................................ ATCTTTTCATCCTCATAGACACTCAAAGAAAGT 337470 32 100.0 34 ................................ AAAATGTGACTCTCTTGCATTTGAGAAGATAGGA 337536 32 100.0 34 ................................ ATCCTTTCGAGCACGAATGTAGGCAGAACCAATA 337602 32 100.0 32 ................................ TTGCGAGAGCGCAGGAGTTTTTTCGCAATGCC 337666 32 100.0 34 ................................ GCTGCGCTATCTCGCGTGTGGCGAGTACGGCTCT 337732 32 100.0 33 ................................ CATGATTATCAATATTTTATATTATATTCAATC 337797 32 100.0 33 ................................ AAGGTGCTGCTTATGCGAAGACTCTTGCCGAGA 337862 32 100.0 32 ................................ TTACTTTCGCCGTCGAGAACAGTATTTGAAAA 337926 32 100.0 35 ................................ CGTGCGTATGAGGCTATATATAACGCTTATATTCG 337993 32 100.0 34 ................................ TGTGACGAGGAGAGCATAGTAATGGGTATTATGT 338059 32 100.0 33 ................................ AAGGCGTCGTAACGAACATTAACATCAAAACGA 338124 32 100.0 34 ................................ TCCTTCTTACGCTCAAATTGAGCTTAATTGGCTT 338190 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 338256 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 338323 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 338387 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 338453 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 338520 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 338585 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 338656 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 25 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 344368-346177 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS264546.1 Parabacteroides merdae ATCC 43184 Scfld0286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 344368 32 100.0 32 ................................ CGTTGACATAAAAATAGAAGATTTGAAGTGAC 344432 32 100.0 34 ................................ TGATATTTGGACGTCAGAACCCATACTCCGCTTT 344498 32 100.0 34 ................................ ATCCGGCACTTCAATACCAAGAATACGCTTAATA 344564 32 100.0 33 ................................ TTAATAACCGTCGCTTCGATCTCGAATGCGAAG 344629 32 100.0 33 ................................ AAGAACACAGTCTGACTTTTATAAGGTTCAGAT 344694 32 100.0 36 ................................ AGATAGGTACGGCTCAAATGATAATGAAGGAACATG 344762 32 100.0 33 ................................ GGTGTTATTTTGAACGATAACATACAAATGAAA 344827 32 100.0 33 ................................ AAATCCTGTTTCTTTATCTGACACACAGGCGAC 344892 32 100.0 35 ................................ TATTGGAGCCGGTAGACGCCAAAAGCGCGCCATTG 344959 32 100.0 34 ................................ AATACTATACGGATGAGTTTTGTGACCCCTTTAA 345025 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 345090 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 345157 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 345223 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 345288 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 345354 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 345421 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 345488 32 100.0 33 ................................ CATAGCGGTAGGAGTAGCCATAATAGGGCCTGC 345553 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 345618 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 345685 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 345751 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 345817 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 345882 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 345950 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 346014 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 346080 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 346146 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.4 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : AGAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //