Array 1 276147-274989 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAXC01000029.1 Streptococcus agalactiae strain NNA035 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276146 36 100.0 30 .................................... AATTCCAGTTGGAATATGCGTCAAACGAAC 276080 36 100.0 30 .................................... CGTTGTCTCATTATTTGATAAATATTTATC 276014 36 100.0 30 .................................... TTCCCTTGCTAATATTAACTTAGGAGCAGC 275948 36 100.0 30 .................................... AAATACAAAAGGTGTTACTGTTTACAACGA 275882 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 275816 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 275750 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 275684 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 275618 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 275552 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 275486 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 275420 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 275354 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 275288 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 275222 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 275156 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 275090 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 275024 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //