Array 1 26873-28852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPY010000007.1 Salmonella sp. 32040203-2019-00159 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26873 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 26934 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 26995 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 27056 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 27117 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 27178 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 27239 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 27300 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 27361 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 27422 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 27483 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 27544 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 27605 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 27666 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 27727 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 27788 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 27849 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 27910 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 27971 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 28032 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 28093 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 28154 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 28215 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 28276 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 28337 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 28398 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 28459 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 28520 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 28581 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 28642 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 28703 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 28764 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 28825 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45425-47284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPY010000007.1 Salmonella sp. 32040203-2019-00159 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45425 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 45486 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 45547 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 45608 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 45669 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 45730 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 45791 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 45852 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 45913 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 45974 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 46035 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 46096 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 46157 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 46218 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 46279 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 46340 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 46401 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 46462 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 46523 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 46584 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 46645 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 46706 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 46767 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 46828 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 46889 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 46950 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 47011 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 47072 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 47133 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 47194 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 47255 29 96.6 0 ............T................ | A [47282] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //