Array 1 131022-130723 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ040500.1 Porphyromonas gulae strain COT-052_OH2199 scaffold9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 131021 36 100.0 30 .................................... CTGATGCAGCTGCGTATATGTGTGCTTCTT 130955 36 100.0 29 .................................... CGATGAGCAATGCGAGTGGATTGGATGGA 130890 36 100.0 30 .................................... TTCGAGACGCCAAAAAGACGAAACTGCCGC 130824 36 100.0 30 .................................... GAAGGGGCATAAAACAAAAAAATTATGAAA 130758 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Left flank : CATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGATACCTCGAAAAGGCTTTAGCGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGAGCACGAACTTGGCGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCGCCGGTATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAGGGAAAGCACTCCCGGCACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACACGGAAGAATCCCCACGCGCTACTCTCTCCCTCAACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGTGAAAAACAGTCTGTCATCATCATTTTAGTAGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTACGTTCCTGCCGGTTCGCACTCAAAAGTTCAAAGTTCGCCCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAACACCGTTGCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12835-11560 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ040465.1 Porphyromonas gulae strain COT-052_OH2199 scaffold12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12834 37 100.0 36 ..................................... AGAAAGAGTCGAGTACTCTTCCATTTTAGCATATGT 12761 37 100.0 34 ..................................... ACTTGAGGACAAATATATTGCCAAAAGTTTTTCT 12690 37 100.0 36 ..................................... CCATACTCAGTCCATGTGTTTGAGCCTTGATTAGCT 12617 37 100.0 39 ..................................... CTGAAGAAAGCTGTACGTTGTACTCTGCACCCCCTTCCG 12541 37 100.0 34 ..................................... CTTTCAGGATTTTTTTTCCAACCTCTTGTTTGAT 12470 37 100.0 36 ..................................... TGTGAATTAAGAATAGACACATTAAGAATGCACAAA 12397 37 100.0 36 ..................................... AAGACATCAGCCTCATTTACAGGAAAGTTTGTGAAA 12324 37 100.0 34 ..................................... ATGTTTTTTATCGCCCAAAGTTCTTTTTTTAAGA 12253 37 100.0 36 ..................................... AGAGCTTGAGTGTTCTTTTTCCGTGCCATTTTTCTG 12180 37 100.0 38 ..................................... TTGATTTCTGAGTGTGCTTGTTCCAAGTGCTCTTACGA 12105 37 100.0 39 ..................................... GTTAACCACTCAAGAAGGTTTGTAGACATCAACATTGCA 12029 37 100.0 35 ..................................... TAAGAGTCTGAGCTTAGAGGTGAGAAATTCGCTCC 11957 37 100.0 35 ..................................... GGTTTACACTTTGAGCAAATCCGTTTCCCACTCCT 11885 37 100.0 34 ..................................... AATTCAGACTTATACAATTCATTCGGATTGTGGT 11814 37 100.0 37 ..................................... TTCTTTCGAACGACTTCCATAAGTTTTAATTCCTGTA 11740 37 100.0 36 ..................................... TCCTAGAAGAGGACGACTGTTAAGAGGATTTGCTAA 11667 37 100.0 36 ..................................... ATTTTGCAAGAGTTATCACACTAGGCGTATGTATCT 11594 35 94.6 0 .......................--............ | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.7 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTTCTTCCTCTCTGTCAGCATTGTTATGCCGCAGCTTGGATGAGCGGACATCCGACCCCACCCAAGAGCCGGAGGAAAAGGAAAAGTATAGTGGTTTAGTTTTTCGAAAAAACTCGAACCACGCATCGCTCTTTGACGTACTGATTATCAGCCGGTTGCAAAAACAACCCTTTTCTCCTTTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGGCTTTTATTTTCGAAAAACAGGGGCGTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTCGAAAATGCCAAAAACGAAGGCTCCCTCTTTCTGATTTTCGAAAATAGAAAATCAGCTAATCTGATTGTATATCAATAAGATATAAGCATCTCAACAGCAAAAATGGTGTTATAGCTGCATTTCTCAACTTGCATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTAGGATTATTCGTAACTTGCAGTCACTCAAGTT # Right flank : TCTTGATGCTCTACTCATCATCACTTGGACTTTCCAAGTTAGATTTTGGAGCGGTTAATATTGTGTTTTGCACAAGATAAGAGCACATAATCACAGCCTTCCGCTTGTGTGCGAGCCAAGGCCGTTTGCGCACCATAATTTTCTATTTCGATGCTCCGAAAAACGTGGCGCGAGATTTTTTTCGCTGTGGTTCGAGAATTTTTTACTTCCCGTGCCACAGCGAAAAAAATCCCGCGCCGCTTTTCCCGAAAACACGCGCCACAATCGCAGCAATTGCGGTTCGAGAAAATCCGATCGGAATAATTGAAATCCGAGACTTCCGAGACCTCCGAAGCCGGCTCTAAGCTCTTACCCTTCTACAACATCTCGGATACGACCCAAAATATCCTGCTTGATGGCAGACAGATGCGCTCCCAATTCGCTCTCTGTCGGGAAAGAACCGTATGGATAGTCCTTGCCTTGGAAAGTATAGTGCATCGAAGAGAACTTCACCCCTGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 69617-59490 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ040465.1 Porphyromonas gulae strain COT-052_OH2199 scaffold12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 69616 30 100.0 36 .............................. GATCATGAATACGATCGCATCAGTCGAATGTATTCA 69550 30 100.0 37 .............................. AAAGCGGCATCGCCTGACCCGCTGTTCTAAAGACTTT 69483 30 100.0 37 .............................. ATAAAACGAATATGGATATAAAAACAAAATTCGACAT 69416 30 100.0 36 .............................. CACGCCGCCCGCGACAATGCCCTTCGTGACGTTCTT 69350 30 100.0 37 .............................. GCTACAAGGCATTCGCGGCGGTCGTATCGAGTATTAC 69283 30 100.0 35 .............................. CTACACCACAAGTTAAACGGCAGAGACAGTAACGG 69218 30 100.0 36 .............................. GATATGCTATTCCCATGTGAGCTTAGTGTATTTCCA 69152 30 100.0 37 .............................. CCTCTTTGAGGGCAATTATATCCCCGCTCCCGATTTC 69085 30 100.0 35 .............................. TCTCAAGCTCGAAATACTGTCATCGACTTTTTCTC 69020 30 100.0 36 .............................. CTAAGGGAGGCAAGGTTCGCAGGCTATTCATCCCCC 68954 30 100.0 36 .............................. GATTGTTTCTGCGCTTGCAGGGGTCTCGAACGCAAT 68888 30 100.0 36 .............................. ATCCTTCTGCGGATTCTCCTGCCCGAGGAGGATGAT 68822 30 100.0 37 .............................. TCCATTCTTGTTCGCCACGCTCAGCTCCACGATGCGG 68755 30 100.0 37 .............................. AGAAATGTTGCCTTACATATAGAGGGGGATGAATAAA 68688 30 100.0 36 .............................. GCTCTTTTTCCCGTTTTGTGACCTCCTCCGCAATTT 68622 30 100.0 37 .............................. TTCAAAAGGAGTTCGGACCCTTTGTATTTATCTATTA 68555 30 100.0 37 .............................. CACATTTGTTATAAACAAAAGGGTGTTTCGCGATTTG 68488 30 100.0 37 .............................. CATATCAGATGAGGCTATAAGAAAGAATTACTACAGA 68421 30 100.0 36 .............................. AACATCAACGCCTTTAGCTCCGCGCTCAATAGCGCG 68355 30 100.0 35 .............................. TTTAATACCGAAGTGTCTTTTGGACGCGCTCGAGG 68290 30 100.0 36 .............................. TCCCGTTGCGCTATTTGCCCGCTATCGTAGTTCTCC 68224 30 100.0 37 .............................. CTTGTTCTTCATCTCCTCGATCATGTCCGCAATCGCT 68157 30 100.0 34 .............................. GACCTTGCCTTTCGTCCTGCCGAGCGCAACGCAC 68093 30 100.0 36 .............................. ACGAAAATAGCGTAAAAATAAAGGAGCATTCAGGGT 68027 30 100.0 36 .............................. CTTCATCTGCGTGCGTTTCGCTTCCACCCATGCGTT 67961 30 100.0 36 .............................. CACAAGAATTAGAATGGTACATTGAGACCATCTTAC 67895 30 100.0 36 .............................. CTCCGCCATATCGGTTGATGTGCACTTTTGCCTTGC 67829 30 100.0 36 .............................. ACCTTAGAGCCGGCAGGCTCATCGAACGGGAAGTAA 67763 30 100.0 37 .............................. TCCATCATGCCGGCAAGGGCGGCCATCTTGTCACCCT 67696 30 100.0 36 .............................. CGGGAACTCAAAGGAAGCGAACGCTATGCGAGTAAT 67630 30 100.0 36 .............................. GATGAGTCGAAGTGTGTATCGAGGCTTGGTGACGTA 67564 30 100.0 36 .............................. CACACCTACGGCCGGTCTAAGGCGGAAGCTGAGGCT 67498 30 100.0 36 .............................. AGATTTCTTTTGCGATGCCGATTCGCTCGTCGCCCT 67432 30 100.0 36 .............................. AGAGTTCCGAGGCATAAAGCCTGAACTTGAAGCCTT 67366 30 100.0 35 .............................. ATCCACCACGAAGAGAAGCTATTGCGCTTCATGTT 67301 30 100.0 35 .............................. AATTCCTGCCTCAAAGCACTCAACTGCGATATTCA 67236 30 100.0 34 .............................. TGGCTTACCAGTTCTATAATCTATAAAGAAGGAT 67172 30 100.0 36 .............................. AGAATTGCCGGGTACAATACCACCCCCGGCGAACTT 67106 30 100.0 36 .............................. CAAGAAGATGAAAAAATTTTTTATTGGAGCCGCCAC 67040 30 100.0 35 .............................. TAGGAGGTGGAAAATAAATTAGAATTGAAAAAAAC 66975 30 100.0 35 .............................. ACTGATGAGAGAGGTTTACGAAGAATTTTTAATGT 66910 30 100.0 37 .............................. ACAAATGAAGGAATTGCTCTATGTTTTCTTCTATTTA 66843 30 100.0 37 .............................. TCTCCTCCGTCCGCAATGACCACCCACTTAAACACGC 66776 30 100.0 35 .............................. TTTATGTACTATGATAAAGTAGTTGGAGCTAAGAA 66711 30 100.0 36 .............................. AAAGTTGGGATTTAAGATAAGGGAAGCTATTATCCT 66645 30 100.0 36 .............................. TCGTGCAAGGGGACATAAATCGCGGAATCTATATCG 66579 30 100.0 36 .............................. TGTATATTCCAGATGATTCGTATGTTGCAAAAGTGC 66513 30 100.0 36 .............................. CTCTTCGACACTTTCGACTGTTTTATCGATCTCCCA 66447 30 100.0 35 .............................. GAGATATTCCTACAAACCCCTGATGAAATCGAATT 66382 30 100.0 37 .............................. GTAATCCCTATCGAACCTGTCGATAGAAAAAAGTTCT 66315 30 100.0 36 .............................. AGTACGCCTGTCAATTAAGCGGGCGTACGACGGTGA 66249 30 100.0 36 .............................. TATCTTGTATATGACAAAGTGTATGAGTCATATACG 66183 30 100.0 35 .............................. TATGAAACTAAGACTATTCGCCATCATGGCCATCA 66118 30 100.0 36 .............................. CCTCCCCTTTATACTGCCCCCACGCGGACAAAATAA 66052 30 100.0 36 .............................. AATCCGTTCTGGGTACTGTCAAGTGGAACGTGACAG 65986 30 100.0 37 .............................. GCTTGCAAAGCGATACGGAAAACTTGAGAAAGGATCC 65919 30 100.0 35 .............................. CCGCCAATACCGTCACCGCGTATGACTATGCGGTG 65854 30 100.0 36 .............................. GAATTCCTGAAGACCGAGCTGAAAGGGGCAGGAGAA 65788 30 100.0 34 .............................. CTGTATATCTTAAAAAGAGGTTGGTGTTCTGCAG 65724 30 100.0 37 .............................. GACTTAGCAGCGAAATGCTTTTCGCTGCCCACAGGCA 65657 30 100.0 37 .............................. GTAATTTTTAGTCGTTATAATAGAGAAACTGATGGTG 65590 30 100.0 35 .............................. CATCCACGAGCGATACAATAAGAGCTATTTAGAGG 65525 30 100.0 36 .............................. GAGGTACCCGAGCCGCAATAAGGCGGCCGTCGCCCT 65459 30 100.0 35 .............................. GTAGAGGCTTGTGGCAGTGCTACGGTTCGGGCTTG 65394 30 100.0 35 .............................. AAAACAAATCTCTGAATTTTGGAGGGGATTATGAA 65329 30 100.0 37 .............................. ATATAATAATAAAAAACTCTAAAAATTTTGTCCGTTA 65262 30 100.0 37 .............................. ACATCTCCGAGAAAGTCCAAGAGTTCCTAAGAACCCA 65195 30 100.0 36 .............................. TTGTTAAATATTAACTTATAAGAAAGTCTTTATTAA 65129 30 100.0 36 .............................. GCCTATTGAACTCATCTCCGCTTAATCCAGTCCATA 65063 30 100.0 36 .............................. GAGAGAAAAGAGCATGGGTTCTTAAAAGAATCTGAT 64997 30 100.0 36 .............................. CGTATCAGAAAGGATATGCAGGACGGTGACCCCGAT 64931 30 100.0 37 .............................. AATGTATGAGCACGCAAACGGAAAGGGCATCACACCG 64864 30 100.0 35 .............................. ACAGCAAGATTAGCTCACCTGTTTGATAAAGGAAC 64799 30 100.0 36 .............................. TCACCCGATCCGTCAGCGACTTCTGCGACAATGCGA 64733 30 100.0 36 .............................. TGTATCTTAATAGAACTAAATGAATTTATACAGTTT 64667 30 100.0 36 .............................. TAGATGAGCAAAAAGCTATCAAATACAACGAGTATC 64601 30 100.0 35 .............................. GAAGCTCACCATACGCGAATTCGAACACCTCCGCG 64536 30 100.0 36 .............................. CCGCGGACGCATTGTGTGGCCGTTCCACACGCCCTC 64470 30 100.0 37 .............................. CCCATCGCACAGGGTTGTTTCCAGAGAACGGTTGTCC 64403 30 100.0 36 .............................. TGTGTGTATGTTATTGTCCTGTTGATGAATCGATGT 64337 30 100.0 36 .............................. GCGATTCCGCACCGCAGGCGGGACGGATGTAACCGC 64271 30 100.0 36 .............................. AGCAGCCAGCGCACCCCCCTCGACGTACCGATCGCG 64205 30 100.0 36 .............................. GGAATCAGGAGCGCCTGAAGGCTATTCTGCACTCGA 64139 30 100.0 36 .............................. AACTTCAAAGAGATCTAACAAACTACTTAAACTTCA 64073 30 100.0 36 .............................. AATTAGAAGTTCTCCATGTAGCTTCTTATAAGACTT 64007 30 100.0 36 .............................. CTAACTCCAAACTTATTAGCGTACTTACTAAGAATT 63941 30 100.0 37 .............................. AAGTGCACAGGCATATAATTTACGACCGCGAAATAGA 63874 30 100.0 36 .............................. TACGGAGGCGGAGGCGCGGGCGGTTTCCCACCTCAG 63808 30 100.0 36 .............................. CAAAAACGCATGACCCTGCCCGCCGCCCCTTTCAAA 63742 30 100.0 36 .............................. AAAGCATCCCTGTTTCGACTGAAAGAGGGCGGGCAG 63676 30 100.0 37 .............................. TCGAACTTGACAAGACGGCAGTGAGTAAGATCAAGAG 63609 30 100.0 36 .............................. CAGAACACCTCAGAAAATTAGAGGTTGTTGACCAAA 63543 30 100.0 35 .............................. TCAGTATACAACAGAAGATGGTAGTGAGGTAAGTC 63478 30 100.0 37 .............................. ATTAATGAGTGTTTAGAGTTCGGAGATGACCGAGCAA 63411 30 100.0 36 .............................. GAAAGAGGGAGACCTTTGTATGGGAGTCTATTATAC 63345 30 100.0 38 .............................. CATCCAGGTACTAAGTTTGATACAGCTCTTATATTAGT 63277 30 100.0 36 .............................. CAATACCGTCTTTCCAGTAGTCTTCGTTTAACTCCG 63211 30 100.0 36 .............................. TCATGATCTCCTGTGTTCGCACAGGCAGATTGATAT 63145 30 100.0 36 .............................. AGTAGGCTCCAAGATAGATCCTACTCCTATCATCCA 63079 30 100.0 36 .............................. GCGGGGAGCACGCGGGCGTTGATGTAGCCCTCCGCC 63013 30 100.0 35 .............................. ACCGCTCATACGAGCGGGTGGAGTACTTGAAACGT 62948 30 100.0 37 .............................. TGCCATGTGCACGCTATTTAATAGGATAAGTCGCGTT 62881 30 100.0 34 .............................. GCCGCCGGACTCAAAGCCACTCGGCGCAATGCCG 62817 30 100.0 36 .............................. TATATGCTCATCATAAAAGATGACACAGAAACCCTC 62751 30 100.0 35 .............................. AAAATTCTTTTTCTGTATTTCCGTTTTGTAACTAT 62686 30 100.0 35 .............................. CTGGTAGTAAGTACTACGGCAGCACTGCTAAAAAC 62621 30 100.0 36 .............................. TTGCTGGGCTTCACGTAGATACCCATCATCTGACGA 62555 30 100.0 36 .............................. GTGGAAGCCGGCTTCAAGTTCGCCCAATGCTGTATC 62489 30 100.0 37 .............................. CGGCTCAAAGGGAAGCTCGAAAGTATCGAGCGTATTT 62422 30 100.0 35 .............................. CGCCGCCCCCATCGCGTTGTTGAATGCGACGATTT 62357 30 100.0 35 .............................. ACCTCTATATCCGACACATCCACGATATCGGCCAT 62292 30 100.0 37 .............................. GCGGCGGCCGGGCTCCACGGGGATGGTCTCCGACACA 62225 30 100.0 36 .............................. TATATTCTGTAACTCAGAAATCGAAGAAATACGTGT 62159 30 100.0 37 .............................. CATCTTTTCGAGGGTATCGATGTCGGTACCGAGTTTA 62092 30 100.0 36 .............................. TGGTATTCTCTCCTTCATCATAGGCTTTATTGTAGC 62026 30 100.0 34 .............................. AAGCCAAAATTGACCGAGTTAAGCAACTTGCGAT 61962 30 100.0 36 .............................. TAATCCCAAAGTGGGAGAAACTGGAGTAATAATTGA 61896 30 100.0 37 .............................. TATCTGATTATTTCAAGGATACTATAAGAGAAGTAAT 61829 30 100.0 36 .............................. TAGTCTATAAACATCACCGCCTTGTGGCAATGATAT 61763 30 100.0 37 .............................. GTATTGGGTCTCCGCTTTCACCTCTACCACCTCTTCA 61696 30 100.0 34 .............................. TGATATATTAGATGAGATATTACCTGACTTATTT 61632 30 100.0 36 .............................. GATGATATATTAGATGAGATATTACCTGACTTATTT 61566 30 100.0 35 .............................. TTTCTTTTTCGTACTTTACAGCAAACACAGAGTAT 61501 30 100.0 36 .............................. CTATCGAGAACACTTTTCATAAAAAGAAATAATGGC 61435 30 100.0 34 .............................. CAAGAGATGTATTACGAAGAGAGGGAGAGGCGTA 61371 30 100.0 35 .............................. TCAGATTGGAATAAATAAATCAGCGTTTGAACGCT 61306 30 100.0 37 .............................. AATGTGTATAAGAACACAGCTATGTTACTCCAAACCG 61239 30 100.0 36 .............................. ATGATTGCGAAATGGGACTTGGACAAAACGCTCGTC 61173 30 100.0 36 .............................. CCATCATAAGGCAGCATGCCGCAAAAGGATTTTCAT 61107 30 100.0 38 .............................. GCATGCATAAACTGTTTATGTGTTTCAGCAGTTACAAC 61039 30 100.0 36 .............................. TTCAGAAACTGCGTATCTTTATAAGCTTCTAAAGCT 60973 30 100.0 35 .............................. AGCTTTTTGCGAATGCTAAGCAACTCAATTACTTC 60908 30 100.0 37 .............................. CTTGCGCACCTCGGACTGAATCTTGAAGACCCGGTAC 60841 30 100.0 36 .............................. TCCATTTCGCTCCTCAGGGAGCTCAATTCCATCTTT 60775 30 100.0 34 .............................. GAAGTCTGCATTCTACTTCAATTAAATTAATACT 60711 30 100.0 36 .............................. CTATTAAATAGAACTTTATTAAATAAAGGTGCTTTT 60645 30 100.0 36 .............................. TGTGCTTGTATATATATTCCCGTATTCCATCCAGAA 60579 30 100.0 37 .............................. TTTAGAGAAGTTGTTGGAGAGGTTGTCATAAAGCTTA 60512 30 100.0 35 .............................. CGACGCCAACCCTGTAGTGCTCTACGACCACGACC 60447 30 100.0 35 .............................. TCTTTGCCACCCAGTCCGCCCGCATGGCGGATAAA 60382 30 100.0 38 .............................. ATATAAGTCGTCCGCCTCCGCGAGTGGCACCTTGGGGT 60314 30 100.0 37 .............................. CCTGCACCGTTACCGCACCCGCCTTGCGGCGTTCAAC 60247 30 100.0 35 .............................. CGCGTTCAGCGCGTGAATCAAGTCTGTGCAGAGGT 60182 30 100.0 36 .............................. CCGAAGTCTCGAGCCAGAACCTAAGCTTATGCCTGA 60116 30 100.0 37 .............................. AAGAGACTATTCTCTTTGAATGTCCTAAACCAAAACC 60049 30 100.0 37 .............................. AAATATTTCGCCAAGTTTTCCACCCTCGAAGGAGTGC 59982 30 100.0 36 .............................. CTATCGCGACGCTTATCAATGACGGCAAGGTTCTGC 59916 30 100.0 37 .............................. CTTGCGCACCTCGGACTGAATCTTGAAGACCCGGTAC 59849 30 100.0 36 .............................. AATCAATGTTTATGCAGAGGGGATACGAGTTCTATT 59783 30 100.0 35 .............................. ACCGTTTACCTGCAGACTTGTGCCCACCCACTTGA 59718 30 100.0 37 .............................. AGTAACGTACAGCGCACCACCACCGCGAGGTCCGCCA 59651 30 100.0 36 .............................. CTGCACCTGCACCGCCTGTCCGCTGACGGATTTGGT 59585 30 100.0 36 .............................. CTTTTCCGTTCAGCCGCACCCCGACACTCATCGTCG 59519 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 154 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTCGACGGAAGCACTTCCAGAGCGAAATATGTGTATGAAGATGCGATGACGGACAACATTATGGACTACAGCCATTTTGTAGGAGTTTCCAGACACAGTTTCTTTCATTGGCAGTGGTATACTATGAAGATAAAACTTAGACAGAGTTATGAAAAGAAAAACAACTAAAATAATATATATTGCTATCCGAGAAAATAAGTACCATTATTCATCGTTACAATGTTTGGTTTTGCGACAACAAGGCAACTAAATTAGGGCTGACTTCATTTCCCGAAGCAGGCCCTTTAATTTATCCAAATATCAAAACGTTTAGCGAACAGCAATAGAAGAGAATCAATTGATGAGAATAGCATTGACAGAATACTTCTCTTCTCGTCGTATTTGTAACTCCAAAAACATGCGCCAAAAAGTTTTCAACAACGAATACGAGTTTGGAATGATTCCAAATAAGCAACAAAACAGAAGCTGATTTTGAAGATAGAAAGTTGATAGACAGCCAT # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCAAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //