Array 1 467753-466268 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEKN01000002.1 Prevotella intermedia strain KCOM 1653 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 467752 36 97.2 30 ..G................................. CGTAATAATATCAATGGGAAAGTTTGATTA 467686 36 97.2 30 ..G................................. CGTAACAACGCTTAAATGTTTCCTCGTCCT 467620 36 97.2 29 ..G................................. TACCTCTTTTTTTGCAGTATAAGACTCCT 467555 36 97.2 30 ..G................................. ACCACTGACTTGTATGAGATAAATAACAAA 467489 36 94.4 29 ..G....T............................ CCAGTCTTGATTCAGTTCTTTTACTGAAT 467424 36 100.0 31 .................................... ATCAAAACACTGTGGATAAATTCTGAAGAAA 467357 36 100.0 30 .................................... TCAAGTAGAGCTTTAAGTTTTTGATTCAAA 467291 36 97.2 30 ..........A......................... CGAACTCATCTTGCTTGCCATTTGCTGGCA 467225 36 100.0 29 .................................... CAACTGATGGTATAATTCCACCGTAGCAG 467160 36 100.0 30 .................................... TTCTCCGATCGTTGAATATTTCCAGACTTC 467094 36 100.0 30 .................................... TAAATGGCTTAAGTTTAGAAAGGGAACAAA 467028 36 100.0 29 .................................... TCCTCTTTGCTGCTTATAAAAATAATTTT 466963 36 100.0 30 .................................... TATTGCCGTCATCATCAACATAACAAGGCT 466897 36 100.0 30 .................................... ACTCAGGTATATCAAGAGATTCTCTGAGAA 466831 36 100.0 30 .................................... TAAGAATAGAGACAATCCGCATATGTTATA 466765 36 100.0 30 .................................... CGAGAGCTTCAATTTGTTTTGTTAACCAAG 466699 36 97.2 30 .............A...................... CGAGAGCTTCAATTTGTTTTGTTAACCAAG 466633 36 100.0 30 .................................... TACCGTAACTTTTAGGTTGGCAAATTTCTA 466567 36 100.0 30 .................................... CGAGAGCTTCAATTTGTTTTGTTAACCAAG 466501 36 100.0 30 .................................... CGAGAGCTTCAATTTGTTTTGTTAACCAAG 466435 36 100.0 30 .................................... CCGTGGTATGGTATCCACTTTGTCCATTGC 466369 36 97.2 30 ............................C....... TTTTATCGGGTATTCTGGAGCTTAAACTTT 466303 36 91.7 0 ..................A.......C.C....... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 98.5 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAAGGCGTACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGTGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGTTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGAAAAGAAAGCAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGAGGGAGGGGAAAATGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACTATCTCGTTATCAGTGTATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAATAGGGGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGGTTTGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATCGGCAAGGGTGGTTGGGGCTTCTGTATCGGCTCGATGCGATGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAGTGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTATC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1006087-1002813 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEKN01000001.1 Prevotella intermedia strain KCOM 1653 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1006086 47 100.0 30 ............................................... CTACAAGGTGCTCGACTTGTTTGCACAAGG 1006009 47 100.0 30 ............................................... CCCATTTCCAAGCGATGTTTTTACTAATTT 1005932 47 100.0 30 ............................................... GGGGGAAATAATCGAGTTCGGGGACTTTGT 1005855 47 100.0 30 ............................................... TAAGCCAAAACACGCCTATTTAGAGCCTAT 1005778 47 100.0 29 ............................................... CAATGGCACACAGAAAGCGTGGATAGAAA 1005702 47 100.0 30 ............................................... CGCCGTTATCGCAAAGTAATACCCGACGTT 1005625 47 100.0 30 ............................................... AGTTGCTATAACTATTCATTTAAAGCTGCT 1005548 47 100.0 30 ............................................... CGCAAGCTCTTCGCAATGCTCATACTTTTT 1005471 47 100.0 30 ............................................... TTTCAGTCGATAGAAGCTCTTTGGACTACA 1005394 47 100.0 30 ............................................... TTTCTTCTCTTCTTTCCCATTGTTTTTTTG 1005317 47 100.0 30 ............................................... GCTTGACGCACTTGCTAAAAATTATGAAGA 1005240 47 100.0 30 ............................................... ACACCCCGTTATTGTAGTATTGGGGTTGTC 1005163 47 100.0 30 ............................................... CTGTAAGTCGTCTTCGTTGGTTGTAAACAT 1005086 47 100.0 30 ............................................... TATTTGCGTATAGGAGAGGCAGGCACGGAA 1005009 47 100.0 30 ............................................... CACTGGGTCTAACGCCTGCTGCTCTTTTAA 1004932 47 100.0 30 ............................................... CTTTATGAACTCTATGTGCTCTATCAGAAC 1004855 47 100.0 30 ............................................... ATAATTTAAAAAATTTATTGTTAATTGATA 1004778 47 100.0 30 ............................................... CTTTTAGGAAGAAGCCCGTCAGCTTGCGCC 1004701 47 100.0 30 ............................................... AAATGGAGGTTACTCCTGAAGAACAAGACC 1004624 47 100.0 29 ............................................... CCATCGGTTACTGTATAGCTGCGCTGTTC 1004548 47 100.0 30 ............................................... GCAAAGAATAGGTTGGAAACTTCCAAAATC 1004471 47 100.0 30 ............................................... CAGCACGTTGGAAGCAGCTTTCTTGCGTAT 1004394 47 100.0 30 ............................................... ACCTGTTGCAGACACGAGAAGAGCGTATCA 1004317 47 100.0 30 ............................................... AAATACTCGGGGGTCGTTATTTGATACTCT 1004240 47 100.0 29 ............................................... ACTAAGCCCTGAATATGTACTTGATAAGA 1004164 47 100.0 30 ............................................... AGATACACTAATTGATAACCCACTAAGCGA 1004087 47 100.0 30 ............................................... GCCTTTGGAATGTGTAGTGGCTTCCATTGG 1004010 47 100.0 30 ............................................... CGTATTGTAATCAACTTTATTTCTATTTAA 1003933 47 100.0 29 ............................................... CTGCACACTTTGGTTTTAAAGTTCCTGAA 1003857 47 100.0 30 ............................................... TGACAGAATGCAGATGTGGAAAGAGAAATT 1003780 47 100.0 30 ............................................... GAACTACTTAATAAATTCAATACAGAGGGG 1003703 47 100.0 30 ............................................... AATTGCGACCATATCATAGAAGTAGCTGTT 1003626 47 100.0 30 ............................................... CATCAGAGGAAACTGGTACTGAGAACCCAA 1003549 47 100.0 30 ............................................... CCTTCTTCAAAGGTAATGATAACACCGTTT 1003472 47 100.0 30 ............................................... CCCCTAACCCCTAAGTTATGAAGTTTGGTA 1003395 47 100.0 30 ............................................... AATAGGAATAGGTTAATTAATGCTGTAAAC 1003318 47 100.0 30 ............................................... GCAATTATCTTTAACACTTAGTAACGGATA 1003241 47 100.0 30 ............................................... AATACAAAATGGAGGCAGCGCAAAGGCGGC 1003164 47 100.0 30 ............................................... TCTGGATCAAGAGCCTTTTCAGAGTAGTCG 1003087 47 100.0 30 ............................................... ATATTTCTAAGTGTTCTTGGTAAAAGTACC 1003010 47 100.0 30 ............................................... AATCTAAGTTTATAGTATTTTTAAAAAATA 1002933 47 100.0 29 ............................................... GCGGTGCGTCCTAATTTGCGTCGTTTGTT 1002857 45 93.6 0 ...............................-.....-....C.... | ========== ====== ====== ====== =============================================== ============================== ================== 43 47 99.9 30 GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATCAAAAGAGTTTCCACCTTTATTCCTGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAGCCAAATGCACCTGGAGCACAATTAGAACTCTTTTAACCCTTCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACACTGATATTCATTACTTTAAGCCATTTGA # Right flank : TAACGACATTTCCGATTTATTGTTCTAAAATCAAGTAAATGGAGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGAGCAGGAAAATAGGGATTGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCACTTTTGCAGAGCAAAAAGATGATGATGGAGCGCAAAATATAACCTATATGCGAATAAAAGTGTTCGTTTTGCAACACAAAAGGTATGGTTTCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGGCGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGAGGCTTTGAAATTTAACAGTTGCGGAGTCGATTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //