Array 1 884-426 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLQ01000141.1 Lactobacillus helveticus strain UC3147 141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 883 29 100.0 34 ............................. GGCTCTCACAAGCTGACTAATGCCACGTCTAACT 820 29 100.0 32 ............................. TTAGCCTATCAGTATGCTAAAAAACATGGTCA 759 29 100.0 32 ............................. TCGTGATGATCGTTTGCATTGGAACTCTAGAG 698 29 96.6 32 ............................G TAGCTATTTAAAGCTAGCGTAATTAGCTTTTG 637 29 100.0 32 ............................. GGTTTCAGTTTCTCAAGCCTTGTTTAATAGCG 576 29 96.6 32 ............................C CAAATTGCCGAGATAATTCAGCGATAATATTG 515 29 100.0 32 ............................. ATCAAGCAACAATTAAATATGTCAAGCAAACG 454 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================== ================== 8 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAAAAATTGAATCAAAGTGGTATTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCATGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : CTTGACGATTTAAGTTAGATAATTCTACTTTGTCTGGATCTACTAATATCATTTCAGAAATGCCCATTAAAGCCATAGCTTGTGCAACCCAACTACCAGTTCCACCAATTCCAATAATTGCAATTTTTTTCTTAGATAATGATTGTATATTGGAAAATTGAGAAAAAACATTTCTTGTTTAAACCATCTTAAATTAGAAATATCTTTTTTTATTAGTTTTTTAATAATATTATCAGAAAGTAATGCATTAAATGCATTTAAAAATTCACCATGCTTAACATTAGGAAATTTTACTAATAATAATGAATATACGCGTGGTGCTAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGACTAGACTGATATGAACCCCGAAATTCGGACAAGAATTTCGAGGTTTTTGTTATGTCCAAATTATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15771-16777 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLQ01000071.1 Lactobacillus helveticus strain UC3147 71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15771 29 100.0 32 ............................. ACATCTGAATAATATTCGATTTCACCTGATTC 15832 29 100.0 32 ............................. GAAGCACTGCTTAACAGTTCCGCGTATTGTTC 15893 29 100.0 32 ............................. CTCAATTTTTGAGTTAAGAGCCAAGCCGTACA 15954 29 96.6 32 ............................C GAAAGACGTTGAATATAACATTGGCGATCAGT 16015 29 100.0 33 ............................. CCCTGATACTCAAACATTGACAAAGTTTTATTA 16077 29 96.6 32 ............................C TTGTTACTTAGCCAAGTAAAGGAAAACGATGA 16138 29 96.6 32 ............................C TTGTTACTTAGCCAAGTAAAGGAAAACGATGA 16199 29 96.6 32 ............................C ACAATAAATCGATGAAATAACTTATCAATATT 16260 29 96.6 32 ............................C CGAAGACGAGCTTAAAGAAGAGTTTGAAAATG 16321 29 100.0 32 ............................. AAAAAAGCGGTAGCATTTCACAACTACCCAGA 16382 29 100.0 32 ............................. ATTTACCGAGCTAGTGTGAAGACGGTTTACAA 16443 29 100.0 32 ............................. AGCTAAATTATGCTTAATAATAAATTGATATA 16504 29 100.0 33 ............................. AACGATGGTTTTGCTTACTTAGATAACTTGAAG 16566 29 100.0 32 ............................. GTACTTAATGGACAACAAACCCACTTCTTGAA 16627 29 100.0 32 ............................. AACAAAGTTTTGCCAGATATTAAGGCAGGACA 16688 29 96.6 32 ............................C TAATGATTTAGGAAGCCACACTTCAAATTTTT 16749 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTATTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAAGCTTTCAAGTGCTATAATATAGTTCATATATGAACTAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAATTGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCAATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCAAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAGGTGCAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //