Array 1 18294-18771 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000014.1 Schinkia azotoformans LMG 9581 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 18294 37 100.0 36 ..................................... TTATTATCATGAAGCGGTACAACTTATCAATTATTA 18367 37 100.0 38 ..................................... ATCCAGCATTGAGAACAGTGGAAACATACAACAGAATA 18442 37 100.0 37 ..................................... GCGCTTTGCCTAGAGCTAGGCTATTAATTCGGCTTAG 18516 37 100.0 36 ..................................... TTTAACCATGTCTATAAACCACTCTTTATTAATTCC 18589 37 100.0 37 ..................................... TTCTACCGCCCAAATCAAATAAACTGAAATCTCCAAT 18663 37 100.0 35 ..................................... CTCTTCAAAGTTGTAGTCACCATAATTACCAAACT 18735 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 37 GTAGCAAAGATAATGACCCGTTATAGGGGATTGAAAC # Left flank : CATTTGTTGTTGCTCAAAGCTTTGATTCTTTTTGGGTTGTTGTCCGGTTGTGTTCATATAGTTGCTCCTTTCCTAGTAGAAATCAATTATTTGTAGTTTTCTACAAATTAGTTTATTTATCCACAAAGACAAATGCGCTTTATTCACCAAGTTTACACAGAAAATCCGAACTGTCTATTGGTACTTTAAAAGGTCCTCTTGTTTGTATAGCATTGCTTAGAAAATGCGCTACTGATGGGAAAGCCTGTACCTCACAGTATCCAGCTTCCTCTTCATACATTTTGGAGAAAATATTCTGATGTAATACTATAAATAATAATTGATGCTAATTTATTGGAGAAAATAAAGGCAGCATATCAAATATAGGATTTAAATGTTTTTCGAAGGCGGTCCTATAATTAATGCAATTTTATTATCTTCGAAAAAATAGCTTAATTATCTACATTACAATTATTCGAAAATGCTGATATAATAATGTTTATGAGGGCTACAAATTTGCG # Right flank : AGATAATTAAACTTATCAGTATTAAATTGCTCTCTGTGTAGCAAAGATAATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAAAGATAATGACCCGTTATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 52-1409 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000055.1 Schinkia azotoformans LMG 9581 contig55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52 32 100.0 34 ................................ AATAATTTGTTCCCTATATTCTTTGTATTCTGAG 118 32 100.0 34 ................................ AACGCTGACGCTACAAACTATCAGGAAGTTATGG 184 32 100.0 34 ................................ TGTGCTTTGACCTTTTCTTCTGCGTTCAAATCAT 250 32 100.0 36 ................................ CTTCCTCGATAGCGGTTTGCACACATGCACGAATGT 318 32 100.0 35 ................................ CGAGCTTAGACGATAGAAACACCAAAGAGAATTTT 385 32 100.0 35 ................................ ATCCAAGATGTAGGACTACGACGGCACCATATTTT 452 32 100.0 34 ................................ CACTATATAATCCGAAGAGCCTAAATATTTTTAT 518 32 100.0 34 ................................ AAACAACAAGAAGATGTTTGTTGTCCTGTTTGCT 584 32 100.0 35 ................................ TAATATAACAGGTGGTGAAGATAAATTGCTAACGA 651 32 100.0 36 ................................ GTAAAAAACGGGCCATGATCGGCTCGCCACCTGTCA 719 32 100.0 33 ................................ ATCGAAGATGCCAGACGAATTGTGATTGAACGA 784 32 100.0 33 ................................ ACTGATTCAAAACCAACGACATTACCTAAATTC 849 32 100.0 33 ................................ TATCAAACTCCTTTTTATTTTTATAATTGACTA 914 32 100.0 35 ................................ GTTATATTCCAAAGGAACTAAACAGTGATGATAAT 981 32 100.0 35 ................................ GACTTCTGTTTCAGTTCCAAGATTCCCATTTCGAT 1048 32 100.0 33 ................................ CTTTTGAACGTTTGCCACCATCTAGTAGCCTTT 1113 32 96.9 34 T............................... ATCAGGTTCAGGGGGTGATGAACTAACTGGTGGA 1179 32 100.0 34 ................................ CAAAAATCATAAATCACTCTGTAAATATTAATGT 1245 32 100.0 34 ................................ AAAGTGGTTACAGAATCTTTCAGAAGCAGATAAG 1311 32 100.0 35 ................................ GGGCTTGTAAATTTGGAAAATCCTCGGCTGGCAAA 1378 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.9 34 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : GGATGCGTGGATTGAAATTCTTGGGCTGTTTTTAAAGCACCTGTTACCCGTG # Right flank : TCAGCAGAAACTTGATGCGGGTCTTTTAAAAAGATAAGAAACAACCATGGCTACGCAATCCGTAGCCACCATCTACAATGAAAATGAATTTCTATCAAAGACTAGAATTACCTCATTGATATGTGGCAATACAGAGAATAACAATACAACCAGGCTGAAAATACAATGGTGGGTCTTAAAAGAAGATACCCTGAATAAGAAACTGGTTATGACAGTATTGAAGTACCATTTACTGTGCATAGAGCACGTATACAAAAGTTTTGAATGATAACTACTGTCATATGTATTGTTAATTATTTGTGAGGTGATTCTTCCATGGAAGCAATGATTGAACGGTGTGTGGGCCTAGATGTACACCAAGAAACAGTGGTGGCTTGTGTATTATTTGGACCATTAGAAAAAAAGCCAAAAAAGTCGATTGAATCCTTCTCTACTACAACATCCGGATTGTTAAAATTACATGATTGGTTAGCATCCTTAGAAGTAACAAATGTTGTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 122629-120816 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000044.1 Schinkia azotoformans LMG 9581 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 122628 37 100.0 37 ..................................... TAACCAACGAATAGGGGATTGGTTAGCGTCAGGAGGT 122554 37 100.0 37 ..................................... AAACCTAAACTTCCACATATTGATGTTGATTGGAAGT 122480 37 100.0 37 ..................................... CCGTAATTACGGAAAATGGTTCACAAAGATTTGTCAA 122406 37 100.0 35 ..................................... GATGATCCAGGCATTCTTTCCGCAATCATCTCTCC 122334 37 100.0 38 ..................................... ACGTGAATCCGTTAGAAATCCTCCAATTAAATTAGACC 122259 37 100.0 38 ..................................... TCGATAAAGAAAGTAACGATATGCTCTTATTTTGTGAA 122184 37 100.0 37 ..................................... ACTAATACAATCCGAATACCCATACAGAATTACTTCC 122110 37 100.0 36 ..................................... TTAGACAAAGACAATCTATAATTATCGTAAGGAGGA 122037 37 100.0 38 ..................................... GCGATAAACACATGTTCATTAGTCCCTATGTGAATTTT 121962 37 100.0 38 ..................................... GAACCTTGGAATGAACCTTTAAAGAAACCTGCAGAGGA 121887 37 100.0 36 ..................................... CTTCACGCATAGCATTTGCATCATTATCCTTTTGTC 121814 37 100.0 35 ..................................... AATGCTGCAGTAGTAAGAGTTCTTACCGGTTCTGC 121742 37 100.0 38 ..................................... AAACCGGAAGAACCTAAACCAGAAATACCACCTGTTGA 121667 37 100.0 37 ..................................... TGGTTATGTACCACTTAATGATGACAGCCTTTCCTAA 121593 37 100.0 37 ..................................... TCGTATCAAAGATGCTAGGGCATGGTAGTGACCAATC 121519 37 100.0 36 ..................................... GCTGTTGAAGATAATCATTCAATTTAATCATCTTGC 121446 37 100.0 36 ..................................... TTAATAAAAATAGACCTGATCGGCTCAGGTCTGGTA 121373 37 100.0 37 ..................................... AAACAAAGCAGCGTTTAAATTCATCCAGTACTATTTT 121299 37 100.0 37 ..................................... CTCGCATATAATATAGATAAAGCTGCACCAACAGTCA 121225 37 100.0 38 ..................................... ATCTGAATTGAATGTCTTAAAAAATAAAAAGGAAGTGG 121150 37 100.0 37 ..................................... TTAATATCCGTTCCGCGTGGACGAATATCGGAGATGT 121076 37 100.0 36 ..................................... GGAGGACCAGCAATTACACCAAACAATTTAAACTTT 121003 37 100.0 38 ..................................... GTAGCAAGAACCGGCTGGTATGAGTATTTAGGGGAGGA 120928 37 86.5 39 ....T.....G..GT..........A........... CGATCTTTAATCAATCTAGAACATCCTTTCTGAGAACGA 120852 37 86.5 0 ....T.............A.A............A..A | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 98.9 37 GTATCAAAGCAGAACCTCGATTATAGAGGATTGCAAC # Left flank : TCAGGATGAACCAAAACTTGATTTTGATTTCAATGGACTTTTTCAACAAGCCGAGCAAGAAGTTACTTGTTTAAATGCAAATGTAGAATGGACAAGCTGGGAAAGGTATTCTAATCGTCAAAAGCAGAGATTGAAAATGGGTGGAATTGTGGGTAACGCAATATACAAAGGAGATTTTCAGCCGTATTTACCTTGGCTGAAACTAGCTGAATGGTGCAATATAGGGAAAAATCCAGTATTCGGTTTAGGAAGTGTAAAAGTAATTATTAAATGAAACCTTATTTAGGTACCGTCAGCAAACCTATATGATTTTTGATGGTACTTTTTATTATAATTGGAATGATTATTTTTTGTGGTCATTATATCGTTATTTTATGTTTTCGAAGGAGAGGGGGCATTTATTGCAGAAAAAGCATATTCGTATTAAAATTAGAATTGATATATTGTAAGAATTTTGAAAGCCTTGATACATAAGCTTTTGACCGTCATGAAAAAATACG # Right flank : AGCCAAATTAAAATAGGAAATTAAAAAATTTTCAAAAAGCCTCAAAAAAGGCTTATTTTTTTTGCCATTTTTGGAGATAACTAGAATAAAAGCTATAAAGGGGGAAGAGAAATGTTAAAAGAATTAATTATTGATGATTATGGAATGAATCTCCATAAGGTAAGTGAACGATTAGTTTTAAAAAAACAAGGGAAAGTGGTGGAGGAACATGCCATTAAGGAATTGCAGGATTTAATAATTAGCAACAAATGTGGCATGATTTCAATTAGCCTTATACAAGAATTGATTGAAAACGGGACGCAGGTCCATTTTGTTGATTTTAAAGAAGAGCCATTTAGTACACTTTATACACCTGCACACCACGGGTCCGTTAAAGCCCGGAGAGAGCAATTGCGTGGCTACCATGATGAGCGGGGGATTGAGCTTTCTAAAGAAATATTAACGGCTAAAGTTCAAAATCAGATTAATACGATCAAATATTTTTTAAAAAGTAGAAAAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAAAGCAGAACCTCGATTATAGAGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 138928-138450 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000044.1 Schinkia azotoformans LMG 9581 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 138927 37 100.0 35 ..................................... GAAGAATCCGGTGACGCCGCTAGTATCATCCCTGT 138855 37 100.0 36 ..................................... GCTTTATCATGTTGCCAGACGGCCCACTTGGCCATT 138782 37 100.0 38 ..................................... GAGGATGCGGTTTATCCTTACATTGTATACGAGTTTGT 138707 37 100.0 36 ..................................... AAAGAATATGACAAATCCTCGACCACCTTCACGTTT 138634 37 100.0 37 ..................................... CCATTAATCGGTGCACCGGTGATTGGGTCAAACTGTT 138560 37 100.0 37 ..................................... TTCAGAATATCAGTATGGCCCCAATCTTTTGCCGCAA 138486 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 37 GTAGCAAAGATAATGACCCGTTATAGGGGATTGAAAC # Left flank : CAAGCAGAAGACGGCATACGAGATATTCCCGTTATAGGGGTTGAAACCCTGGAACAAACAACAATTGATACTATGAATTTATT # Right flank : CCATGATAAACTGATATTTTCAATTTTAAAGTCCTAAAAATATATCCAGAATGGAAAGGATTCCTCCTACACCGTTGGTTCCTTTGATGTATTGAGGATGACTTATTAATAGGGTTTTACCCAAAGCATAAAAAACACGGATGATTTACCGTGTTTTAAAAAGTTAAATAAGTCTTATACTCTCAATAAGTATTGTTTTTTCAAAGGTTTTTCTATCAAGGAAGTTGGAGAAAAACTCCTGTTCACCTTTAAAACCAGTTTCCTTCATCATGAATAGTACTTCTTTGATCTGAAACGGGATATCTTCCTTTAGTAATTTATCTATCTCACTTTTATCCGTCTGTAATAGTTCCTTATATACTGGTAACTTTGAAAACCAATTGGAGTTAAAGCCAAATAAATAGATCGGTATGTTAGTGTTTGTGTTTTTTATAAAATTATCAGTAATTAAAAATCCATAGGGATCAAGGTCACACCAAAAATAAATTTGTTGAAGACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAAAGATAATGACCCGTTATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 52-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000075.1 Schinkia azotoformans LMG 9581 contig75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52 32 100.0 34 ................................ CAATGGCGCATCAAATATTGATAACATGCCTTTA 118 32 100.0 34 ................................ TTGCTACTACCAGTCAAAAGAAAATCGTCCATAT 184 32 100.0 34 ................................ TGCTAAACTATTAGTAGAATGGTGGTGATAATTT 250 32 100.0 34 ................................ AGAGAGGTGCGAAATAATGTACGAGGTCGTTGGT 316 32 100.0 34 ................................ AAAGTACGTACCTAAATTACGCATATCATTTCTA 382 32 100.0 33 ................................ ATAAATAAAAAATTATATCTAAAATAAAAATGA 447 32 100.0 35 ................................ TTATTTTGTTGTGCAGTAGGAAATGTTGGTTAATA 514 32 100.0 35 ................................ ATCATAAACAAATACAAGAGGCTTATTATAAAAAA 581 32 100.0 36 ................................ CTTAACAACGATCATTCGCTCTTGAGGTATCTCCCA 649 32 100.0 34 ................................ GTTAGAAGGTGATTATTATGAAATGCTCAAGGCA 715 32 100.0 34 ................................ ATTTTGTGGCTGTTAGGGTTGGTTGGATCAATGT 781 32 100.0 33 ................................ ATGAATTTCTTTAGTCATTCTCCAAGTTTCAAA 846 32 100.0 35 ................................ GTGATTGTCTACCTGTTTAATACCTGTAACAGTTC 913 32 100.0 36 ................................ CTACAGTTTGTTTTCTGATAGATCCATCTGGCTATT 981 32 100.0 36 ................................ TGGTAGAATTAAAATTGAATTACTTAATCCAACCAT 1049 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 100.0 35 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : GATGCGTGGATTGAAATGTATAAGATACTGCTCTAAGAATAGCATCAGAGCG # Right flank : ATTGATGTCTGGAAAGAGCGATAATTGAATTGCCAGTCGCATCCCACGCGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 53-875 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000082.1 Schinkia azotoformans LMG 9581 contig82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53 32 100.0 35 ................................ AAACCAAGAGATAGAAAAATTGTTAATTACTGTAT 120 32 100.0 35 ................................ TTCCCTCTCGCTCGTCAGGTAGATATTACTTACTT 187 32 100.0 34 ................................ CTTCTGATTTGTCTTGAGACTTCTTTTCCGTTAA 253 32 100.0 34 ................................ CTATTAGGCACATCAGACAAGCCGACACAACAAA 319 32 100.0 35 ................................ ATTCCGATAAACTAATAAAATATGCATTAAATAAG 386 32 100.0 34 ................................ TTTGCGTTTGTTAAGTAACCCAGTGCAATTTCGT 452 32 100.0 33 ................................ AAGTATAGTCCATTTATCATTTATTAAATCTTG 517 32 100.0 33 ................................ ATCCTCACACCAGGAATGACTCGATCTTTAGAA 582 32 100.0 33 ................................ GTGCTCAATTTATAAAGTGTAATAACCCCTTTA 647 32 100.0 34 ................................ ACCACTTGAAAGCGAACGTTTTTTTATTTCAATT 713 32 100.0 33 ................................ ATAGCATCGGCAGTTTGCCAGACCGTATTTGCA 778 32 100.0 34 ................................ ATAATAGCGTAAACCTCAATCATTTGACGCTTAA 844 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 100.0 34 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : GGATGCGTGGATTGAAATTCGTTGTCATAATCTTTAAAGCTATTTCTAGTAAG # Right flank : AATTGGTAGCACTATTCTTATCTATATGTTATAGGTCGCATCCCACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44516-45004 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000092.1 Schinkia azotoformans LMG 9581 contig92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 44516 32 100.0 33 ................................ ATGCCGAATGACGAGACATTACTGGAACCTAGA 44581 32 100.0 33 ................................ GTCACTCATGACTGGGTAAGCCGCAATTTAGGC 44646 32 100.0 33 ................................ GACATCAAGCCTGCAGCTAAACCGTTTAATATG 44711 32 100.0 33 ................................ TGCCCAATCCTCGTACATATCATCTTGCTCTTG 44776 32 100.0 33 ................................ CGAACAGGTGGCGACATGCACCGAAAGACTGCC 44841 32 100.0 34 ................................ GCCATTGACTCTCATAAAGAAAATACTTTTACTT 44907 32 100.0 34 ................................ TGACCAATTGTCAATATCAATTAAGCCCTGCAAA 44973 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 8 32 100.0 33 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : TAGATGAATACCCACCATTTTTGTGGAAGTAGGTGTAATATTTGTTAGTGTTAATTACGTATGATGTCAGTACAGTTAGTGGTTCGGGGCAGAAAAGATTGCGGAAGGTTGCAAAAGTGTGTCAAAACTATGGTCAGCGGGTTCAAAACTCAGTGTTTGAATGTATTGTGGATGCTGCACAATTTACAGCATTAAAATATGAACTTGCCGATATCATTGACCACAATCAAGATAGTCTTAGATTCTATCAGTTAGGTAATAATTATAAAACAAAAGTAGAACATATTGGTGTAAAAGAATCAATAGATTTGGAAGGACCTTTGATTTTTTAGTGCGAATGTATAGTGAACATAGAATTCCATATACATTCGCACCGGTTTTTCACTGTTTTTTTTGTGGATTTTGTGTATTTTTGTTAAGTGTTCTTTATTTATTTAAAGAAAATAGCGAGTTTTAGAACAAAAAGTACAATATTATGCTATTTTTGTTCGGGATTCGCT # Right flank : TGTTCAGCGTAGATTGGATTGCCACAAGCGATAGGTCGCATCCCACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 552-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLR01000097.1 Schinkia azotoformans LMG 9581 contig97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 551 32 100.0 34 ................................ AGCTCCAGCTTCACCTGCAATGTAGTTTCCGAAG 485 32 100.0 35 ................................ AAACAACGGATAACGGTAAAATTTATCGCTATGAA 418 32 100.0 35 ................................ TCAAGGTACCTGCCATCCCATAGCGTTCCATCTGG 351 32 100.0 35 ................................ GAGTCATCGTGATTTTTACACCCGACACATCCACC 284 32 100.0 36 ................................ TAACTCAACTCCAACTTGGTTGCTTGCATCTTGTAA 216 32 100.0 33 ................................ CCCGTTATAAAGTCTAGCTGTACCAACATTAAC 151 32 100.0 33 ................................ ATCTAATAAATCAAGCGTGTCTTTTTGGGCTAT 86 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : GATGCGTGGATTGAAATTGAATTCAAATGTGGAATAATGGACATAAGTAA # Right flank : TATCATCCGCATAAGCTGGCAGATGGTTAGTAGGCACGTCGCATCCCACGCGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //