Array 1 162348-163237 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJETO010000002.1 Staphylococcus pseudintermedius isolate 18S03465-1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    162348	    36	 100.0	    29	....................................	TTCTTGAAAGCTATTGAGCCATACGTTAC 	
    162413	    36	 100.0	    29	....................................	AGAGGTGGTAAATTGATTAAGTATCTAGC 	
    162478	    36	 100.0	    30	....................................	CAATTAGTGGTCGAGAACTTCATCAAGCAT	
    162544	    36	 100.0	    30	....................................	GATTATGTTATTTTAGAGTAAATGAACATG	
    162610	    36	 100.0	    29	....................................	AAACCAGCCGAACCTTTTCGTACCCAATT 	
    162675	    36	 100.0	    29	....................................	AATTTACTGAAAGCAGTGAGTAATATTGC 	
    162740	    36	 100.0	    30	....................................	ATCATTTCCGGCTTATTACCTTCGCTGATT	
    162806	    36	 100.0	    30	....................................	AATTGTTGGTGAATCCGAAGATGGAATGAC	
    162872	    36	  97.2	    30	.T..................................	CGGTAATTAGAATATTGGAGGGCGAGTGAA	
    162938	    36	  97.2	    29	.T..................................	ACGTGCTTTGAATACTTCTATGGGTAAAT 	
    163003	    36	  97.2	    30	.T..................................	CTAAACGATGACATGACTATGACATTAATC	
    163069	    36	  97.2	    30	.T..................................	TTCAATGGGTGTCTGAAGGCTTTAATCATA	
    163135	    36	  97.2	    30	.T..................................	GAATGGATTAATCCGCAAGCAGTGGACGCA	
    163201	    35	  83.3	     0	.T.......T................-.CA.C....	|                             	TC [163234]
==========	======	======	======	====================================	==============================	==================
        14	    36	  97.8	    30	GCTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTATAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTCAATGTTTTTGGTTTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:73.53%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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