Array 1 218697-220310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFG01000006.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM N44698 N44698_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218697 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 218758 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 218819 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 218880 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 218941 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 219002 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 219063 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 219124 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 219185 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 219246 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 219307 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 219368 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 219429 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 219490 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 219551 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 219612 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 219673 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 219734 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 219795 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 219856 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 219917 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 219978 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 220039 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 220100 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 220161 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 220222 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 220283 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //