Array 1 2992-2484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHL01000044.1 Pectobacterium betavasculorum strain NCPPB 2793 ID_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2991 28 100.0 32 ............................ GTCGTGGTCTGAACCATTAAATGGAGTAATGC 2931 28 100.0 32 ............................ TGACTCTATTCAGTCAACGTCTTATGCAAAAA 2871 28 100.0 32 ............................ AGTAACAGCGACATGCGCGGTATCATCGACTC 2811 28 100.0 32 ............................ CGGGAATAGTTCCCCGGAATATTTCATTATTA 2751 28 100.0 32 ............................ TATGTTGGAACGTCGCACCAGAGCTTGGATTT 2691 28 96.4 32 ...........C................ TGAAACTGGCGGATAAATGTTGCCCGATGTGG 2631 28 96.4 32 ...........C................ AACGCCGGACTGAAGCAACAGACGCATCGTGG 2571 28 100.0 32 ............................ TTCTGCGACGTGATGTTTGATAAATAATTCAG 2511 28 82.1 0 A....................C..TTC. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAATTATGACACCTTGCTTACGGAGAAAAACGC # Right flank : CAGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGCCCTATTTTCGTAATGTTTTCAAGTAATGGGTTTCTTTTGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCAAGGGAATGAGTGGCTATGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAGGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6334-5526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHL01000008.1 Pectobacterium betavasculorum strain NCPPB 2793 ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6333 28 100.0 32 ............................ TCGAAGCGACTATTCATGCGAGAGATCGGGCC 6273 28 100.0 32 ............................ CATTCTTGACCGTTTGAATACATCGCACGCAA 6213 28 100.0 32 ............................ ATCCGGCAAACGGTTAATCTCGCTTTCAACAT 6153 28 100.0 32 ............................ GGCATGACCACCAGCCGGACTACTTGAAAAAC 6093 28 100.0 32 ............................ ATATGGGGCGCTAGGCACGTCCTTAATGGCTT 6033 28 100.0 32 ............................ ATATGGGGCGCTAGGCACGTCCTTAATGGCTT 5973 28 100.0 32 ............................ TTGAGTATTAGCAGCGCACGCGATTGCAGCCG 5913 28 100.0 32 ............................ TAGAATGTTTAGAATGGTTTAGAGCAAAACAT 5853 28 100.0 32 ............................ ACGCGACGCAAAATAGAACTGATGTAATCGAT 5793 28 100.0 32 ............................ TAATCGGTGCTGCGCACTGATATAGGCTTTCA 5733 28 100.0 32 ............................ TGACGGCTGACGTCAATCTGCTGGCCGGAGAC 5673 28 100.0 32 ............................ TGACAAAACCCAGCGGCGCGGGCTCCAATCTG 5613 28 100.0 32 ............................ GACACGCAACGCTCAACAACCGAGCAGGACGT 5553 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGATACTTTCTCCGACACCTGGTGAACTGTATGTTTCCATGCTGGTCGGCGTAGCGATGACCACTATCGGCGTCGTGAAGTATCGGCACGCTCAGCACAACCCGATAGATCCCCACTCAACGCAGACCAAAACAGTTGCCACAAAAACGATCTCCACAAAAACAATCACCGCATTCGTGCTGATCGCGCTTTACCTGGCACTTCCACTGTACCTCTATCTACGCGAACCTCTACCCTACTGCGCCTTTAGCCCCAGCGGACAGCAGTTAACGGTATGTTTGGGAGAGAGTGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTATCCAAGACCCTTTTTTAACGGCTGGTCGTAACTTACTGATTTTTATCTCTCAGCAGCCGCAATGATAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCTCTTTAATAATCTGGTTATTAGCATAAAATTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACATGGTTTTGGGAACGCGATGTACAATATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACCAACGGCCGCCTGACTAATCAGGAATTGAGCGAACTGGTCGGGCTTTCCGCCTCGCAGTGCTCACGCCGACGCATCGCGCTGGAACAGGCACAGCTCATTCTTGGCTACCATGCCCGCCTGTCGCCGAATGCCGTTGGATTGGAATGTCTGGGCTTAATTGAAGTGCGGTTAATCAACCACACCAGCGAATATGTTGAACGCTTTCACCAAATGCTGGGGGAAGTGGATGCGATTATTGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCCGGACTCAGCACGCTGATTAGTCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 454-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHL01000079.1 Pectobacterium betavasculorum strain NCPPB 2793 ID_157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 453 28 100.0 32 ............................ ATGTTTCTCACCGCACGTTTTATCATTGGATA 393 28 100.0 32 ............................ GAATGTTTATGACGCGGAAAAAGGGGTTTAAA 333 28 100.0 33 ............................ ATACTGTTTCATAGTAATTATCCTTCGCTACGT 272 28 100.0 32 ............................ TTATCGCACTGCAAGACGGCTGCGTATACACG 212 28 100.0 32 ............................ AACACGTATTACGGGCGGGCGTTTGCGGTTAT 152 28 100.0 32 ............................ ATTATGACACCTTGCTTACGGAGAAAAACGCA 92 28 100.0 32 ............................ GTCGTGGTCTGAACCATTAAATGGAGTAATGC 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270748-268498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHL01000006.1 Pectobacterium betavasculorum strain NCPPB 2793 ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 270747 28 100.0 33 ............................ GGATATACCGCGGATTCCTTAGCGCCGGCGTAT 270686 28 100.0 32 ............................ GGAATGGCATTGGGTTGGGATACCGCACTGGC 270626 28 100.0 33 ............................ ACAATTACGAGTTGGACCCGGTATCGGGCGAAT 270565 28 100.0 32 ............................ GTTACGGGGCAGCGGCTCGCAATGCGACAGAC 270505 28 100.0 32 ............................ AAAAAGAAATTATTTATGGGATGGCCTTATTG 270445 28 100.0 32 ............................ ATCAATAGATGACATTTCTAAGCTGCCTGTGC 270385 28 100.0 31 ............................ CGCCGCTGGATGAGAGTCGAGCAGGGTTTTC 270326 28 100.0 32 ............................ TGAAAGAATACTCAGTTGAGTTTATTCTTGAG 270266 28 100.0 32 ............................ ATCTCGTCATCGATATACAAACCGCTTGTAGA 270206 28 100.0 32 ............................ TTGAAAACGTCGCGCTAAACTCTACTAGATCA 270146 28 100.0 32 ............................ GCACTGCGCGTAACCGAATTGATCGCGGCATT 270086 28 100.0 32 ............................ GTCATTAACTGTTGCAGATCCATTCGGTATCG 270026 28 100.0 33 ............................ GGGAAAGCGCGTGATGAGCAGCCAGCGAAAGAC 269965 28 100.0 32 ............................ ATTAAAAGCCTGGTAGACCGCTGTAAGGTCCT 269905 28 100.0 32 ............................ TAATCTCTGCAACGAATCTGTCTGCGTCTGTA 269845 28 100.0 32 ............................ TGACCACGCCGTAAACGAACTGACCGAATTCT 269785 28 100.0 32 ............................ TTCGTGTCCGCCGAAGGTCTGGAGTCCGTAGA 269725 28 100.0 32 ............................ CTCTGCATAATCGCGGCTAAACCCACTCATAT 269665 28 100.0 32 ............................ GGAAACTGGAGCGCCTGATCCGACTGCTCATT 269605 28 100.0 32 ............................ GAAGAGGGGCGCGTTGTTATACGCCTACGATT 269545 28 100.0 32 ............................ AGCGACTCGGATTTCGTCAACCTTAAATACTG 269485 28 100.0 32 ............................ ATGATGTGCTATTGTGCGGCACTTCTCGTACT 269425 28 100.0 32 ............................ TCGGCGATTCATACCTCGCGTCGGGATATTGC 269365 28 100.0 32 ............................ GCGCTGCCGTATAACCCACGCTCGGCGCTGTA 269305 28 100.0 32 ............................ TAGAGGAAGAGCGGCGGCGCACTCAACTACTT 269245 28 100.0 32 ............................ GGCAAAAGGGAATAGCATGGAGCCGGTCATAC 269185 28 100.0 32 ............................ TGCTGTGGCGTTCCGCGCAGTGTTCGCCAAGC 269125 28 100.0 32 ............................ GTCGCACGTTTGAAGCGCAATACATGCAGAAG 269065 28 100.0 32 ............................ GACAATGCTAAGGGCGCGCTGAATAACTTTAT 269005 28 100.0 32 ............................ CACATCTATAATCTGGTTTCCAGGCTTATCTG 268945 28 100.0 32 ............................ ATTAGCCCCAGCCCGGCCAGCGTTACCGTGTC 268885 28 100.0 32 ............................ GCTCGTCTAATGACACGTAGTGACTATTACTA 268825 28 96.4 32 ...........T................ GTTAATGCCGTTATGTCCGTGCACGCCACATT 268765 28 96.4 32 ...........T................ TGCGAAATATCATCAGTTTGCATGGCTCCATT 268705 28 96.4 32 ...........T................ ACTTCCCGCGCAGATGGCCGAGTGCAAAGAGC 268645 28 96.4 32 ...........T................ GCCTTGCGGTATGCCGGCTTGTGGCGGCAAGG 268585 28 96.4 32 ...........T................ CCCATATCACGCAATGTTGCGTCAGTTTCGGA 268525 28 67.9 0 .....T.....TGC......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCCTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAATCCATATCACGCGGTAAGCGAATAGCACGGTTATTACCGTTTTTAAATACCGAAACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGCTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGCATGCACTTAACATAGGTCTACCGATAATAGATAAAATCGTTGCCACAGGATTGGCACCCTTTTTTTACAACCAGTCGTAACTCATTGATTTTTAATATCGATTAAATGCTACAATAAAAAAGGGTTTTTCGGAGAAAATGGTTTATTTTCTTTTAAAATTAGATAACTACCGTAAAATAGGAACG # Right flank : TTATCGGATACATCGCTGGCACGATTCATCTCAAGGGCGTTATTCCCCATTCAGCGTAACAATCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATACCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTAATGGGAATCGTCAGGCTGTTTCCTAGCAGGCTGCCTTTCAGGTGGGCTGGCATGTCGTCACTGCCTTCATAAGTATGGCGGTAGTACGGTTCATCTTCAGGTACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGCCCGACTTTTATCTGGCGCAGTGCAACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGACTTCACGTGCCAGAATAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 280780-281289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHL01000006.1 Pectobacterium betavasculorum strain NCPPB 2793 ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 280780 28 100.0 33 ............................ ATGATAGTCAGCACGTCGGCGGAATTAGATAAA 280841 28 100.0 32 ............................ ACCACGATTTGAAAGCAAACCGAGCGGTATAC 280901 28 100.0 32 ............................ TACGAGCATGCCGTTGCAGGCGATGCGGTTTA 280961 28 100.0 32 ............................ ACGAAACGGTCATCGCCGCGTCTCTTAGGATC 281021 28 100.0 32 ............................ AGATACCGTGGGCTGTGCGGTAAAGCCTACCG 281081 28 100.0 33 ............................ GACAAGCGCGTATGCAGGCCAGCGCGGATTCTT 281142 28 100.0 32 ............................ ACTTTTGCGATACGAAAATCGCGTTCCGTGTT 281202 28 100.0 32 ............................ ATGTTTCTCACCGCACGTTTTATCATTGGATA 281262 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAGTCCGAAGGCCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAGTAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAACTTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGATTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATTGGGCTACA # Right flank : GAATGTTTATGACGCGGAAAAAGGGGTTTAAAGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36-363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHL01000085.1 Pectobacterium betavasculorum strain NCPPB 2793 ID_169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 ............................ GTCGTGGTCTGAACCATTAAATGGAGTAATGC 96 28 100.0 32 ............................ TGACGGATTAGTCGTTGCCGCCGTAAATAACA 156 28 100.0 32 ............................ ACTTTTGCGATACGAAAATCGCGTTCCGTGTT 216 28 100.0 32 ............................ CACCCGTTAGTGCTTTTTTCAATAACCGCTTC 276 28 100.0 32 ............................ ATGTTTCTCACCGCACGTTTTATCATTGGATA 336 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAATTATGACACCTTGCTTACGGAGAAAAACGCAG # Right flank : GAATGTTTATGACGCGGAAAAAGGGGTTTAAAGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //