Array 1 3474-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXJ01000103.1 Xanthomonas vasicola pv. zeae strain X01 NODE_55_length_22002_cov_10.1554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3473 31 100.0 35 ............................... GGCGTCCACCTCGCGCCACACGTTGGCGACGTGGC 3407 31 100.0 34 ............................... GCGCTGCCCGTGCGCACGCCGCCGGAGTTCGACG 3342 31 100.0 36 ............................... GTCGGTGCCTGTCGGCACGGCGCATACTTTGCCCAT 3275 31 100.0 34 ............................... GGCTACAGCCGCACCTGTCCAACGATTCCCGATG 3210 31 100.0 34 ............................... ACAACTCGGAGGCGAATCACAGTCGTCACCGCCT 3145 31 100.0 34 ............................... CTGAACCCGGGCGCTGTCTATGCCACATCCCCAA 3080 31 100.0 35 ............................... ACCGTGGGCACCCAGTGGCCGCGCTTGATGGCGAC 3014 31 100.0 34 ............................... CTTCAAGCCGACGTGCAGCAGCTGCGCTAGCAAT 2949 31 100.0 35 ............................... ATTGCGGCCGGGAAATAGCCAAACAGGACAGCATG 2883 31 100.0 36 ............................... TCAAAAGGCTAACCCGGCTTGTGAGGTCTGGCTGGA 2816 31 100.0 36 ............................... CAAGCATGAGCACTCACAGTGCGCCCGGCTCGGCTG 2749 31 100.0 34 ............................... CCACTCGGGGAAGTGATTGCATAGATGCCACTTT 2684 31 100.0 33 ............................... TTGATTACACCCTGCAACACATCTGCACCCATC 2620 31 100.0 35 ............................... CCATGCTTTCCTAACGTGGCACTCTGAGCGGTGGG 2554 31 100.0 36 ............................... TATGCTGAACATGAAACAATGACGACACATCCGCTT 2487 31 100.0 35 ............................... TTGCCCTCAATGCCAACGGCTACATTGGTGGCTTG 2421 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 2355 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 2290 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 2225 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 2159 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 2093 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 2027 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 1959 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 1891 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 1826 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 1760 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 1693 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 1626 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 1561 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 1495 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 1428 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 1361 31 100.0 35 ............................... CGTTACTGGCAACGAGGCACGAGTTTCCCGGCTGC 1295 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 1229 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 1163 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 1096 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 1030 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 964 31 100.0 33 ............................... TGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCA 900 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 834 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 767 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 703 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 636 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 571 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 506 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 439 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 374 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 308 31 100.0 34 ............................... CTTTCGCCGACCTTGATTAAGCAGCTTTAGCATA 243 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 177 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 51 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CTGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTTTTGCAGGGCCATGCTGACCGTAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 85-1430 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCXJ01000064.1 Xanthomonas vasicola pv. zeae strain X01 NODE_28_length_55183_cov_10.5201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 85 31 83.9 35 ..T...TTGA..................... CAGTGCCTATGCAGCGGCTGTATCAGCTTCGACGC T,A [90,97] 153 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 219 31 100.0 34 ............................... GAGATACGCGACATGATTGCGTGGGTGTACGGCT 284 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 350 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 415 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 481 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 547 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 613 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 679 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 745 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 810 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 875 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 940 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 1005 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 1073 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 1139 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 1204 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 1269 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 1335 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 1400 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 21 31 98.3 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CATTCCATCCCGCCAAACCGCGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAAG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //