Array 1 304342-305713 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGJ01000005.1 Salmonella enterica subsp. enterica serovar Ohio strain BCW_2159 NODE_5_length_440939_cov_6.01051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 304342 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 304403 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 304464 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 304525 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 304586 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 304647 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 304708 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 304769 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 304830 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 304891 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 304952 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 305013 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 305074 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 305136 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 305197 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 305258 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 305319 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 305380 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 305441 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 305502 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 305563 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 305624 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 305685 28 93.1 0 ............T..........-..... | G [305702] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 322000-323494 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGJ01000005.1 Salmonella enterica subsp. enterica serovar Ohio strain BCW_2159 NODE_5_length_440939_cov_6.01051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 322000 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 322061 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 322122 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 322183 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 322244 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 322305 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 322366 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 322427 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 322488 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 322549 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 322610 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 322671 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 322733 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 322794 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 322855 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 322916 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 322977 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 323038 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 323099 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 323160 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 323221 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 323282 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 323343 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 323404 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 323465 29 96.6 0 ............T................ | A [323492] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //