Array 1 196001-193408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOGK010000001.1 Salmonella enterica strain FSIS 026 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196000 29 100.0 33 ............................. CATCGGCTGATACCACGATGTACACCACGCCCC 195938 29 100.0 32 ............................. CTGCCTTTGAGATAGTCCCAGTTGCTTTCTGT 195877 29 100.0 32 ............................. CCATTTATTTTTACGGGTGGCGCCGTCGTATA 195816 29 100.0 32 ............................. CCCTCTTTCCCTCGCTGATGAGGAAACAAGAT 195755 29 100.0 32 ............................. TTCGCCGATGTCTGGTGGCGCTTCGTCTTCGG 195694 29 100.0 32 ............................. TGCCTCAGACCGATGCGGGTGTTACACGTCTT 195633 29 100.0 32 ............................. CCCTCATGTTTTTCTCTGAGTGAACGTAAAAA 195572 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 195511 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 195450 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 195389 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 195328 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 195267 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 195206 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 195145 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 195084 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 195023 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 194962 29 100.0 32 ............................. GAGGGGGGTTCTTCATCGTCTGATGAAAACGG 194901 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 194840 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 194779 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 194718 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 194657 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 194596 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 194535 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 194474 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 194413 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 194352 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 194291 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 194230 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 194169 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 194108 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 194047 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 193986 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 193925 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 193864 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 193803 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 193742 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 193681 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 193620 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 193559 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 193498 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 193437 29 96.6 0 ............T................ | A [193410] ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214011-212763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOGK010000001.1 Salmonella enterica strain FSIS 026 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214010 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 213949 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 213888 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 213827 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 213766 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 213705 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 213644 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 213583 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 213522 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 213461 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 213400 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 213339 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 213278 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 213217 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 213156 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 213095 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 213034 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 212973 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 212912 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 212851 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 212790 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //