Array 1 3016003-3017555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045509.1 Salmonella enterica subsp. enterica serovar Anatum strain M-5360 chromosome M-5360, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3016003 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3016064 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3016125 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3016186 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3016247 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3016308 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3016369 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3016430 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3016491 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3016552 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3016613 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3016674 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3016735 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3016796 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3016857 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3016918 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3016979 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3017040 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3017101 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3017162 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3017223 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3017284 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3017345 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3017406 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3017467 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3017528 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033870-3034387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045509.1 Salmonella enterica subsp. enterica serovar Anatum strain M-5360 chromosome M-5360, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033870 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3033931 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3033992 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3034053 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3034114 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3034175 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3034236 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3034297 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3034358 29 93.1 0 ............TC............... | A [3034385] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //