Array 1 158857-158155 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWQ01000017.1 Salmonella enterica subsp. enterica serovar Aberdeen strain NCTR144 NCTR_144_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158856 29 100.0 32 ............................. ACAGTATCGACGCAGAGGCCGAAGCGGAGCGT 158795 29 100.0 32 ............................. TACCCACAGCGTGAATTGCTGGGGATCTCCGC 158734 29 100.0 32 ............................. AATATGTCGGTATTCCTATAATGTTAATTTTC 158673 29 100.0 33 ............................. CCGCGCTCGATGCGGCTTATCATTAAAAATTAC 158611 29 100.0 32 ............................. GCATTGTGCAACTCAGCAATGCCACTGACAGT 158550 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 158489 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 158428 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 158367 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 158306 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 158245 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 158184 29 96.6 0 ............T................ | A [158157] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177782-175617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWQ01000017.1 Salmonella enterica subsp. enterica serovar Aberdeen strain NCTR144 NCTR_144_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177781 29 100.0 32 ............................. ATGGCTGATAACCTCGACGGCGATTTAAAGAA 177720 29 100.0 32 ............................. CTGGGGCTGGGTAAAGTGGCAGGCTGGCTCGG 177659 29 100.0 32 ............................. GCAGCAGCGAAAAATTACGATCCCACGGTGTA 177598 29 100.0 32 ............................. GCGCGGGCGCAATATGACCGTATGCAACAGGT 177537 29 100.0 32 ............................. TGAGGTGACGTTATGATGATGGTTTACGGTAT 177476 29 100.0 33 ............................. TACCTATAATGTACATTTTAGGTACTTATTCGC 177414 29 96.6 32 ............................A AGAGCAGGAAGAGTTCAAAACGAACTCCGAAC 177353 29 100.0 33 ............................. GCTGCTTTCGACACGGGAAATCGGTGCGATGCC 177291 29 100.0 32 ............................. TGACACTGAGCGAAAAACAGCAGTTGTTTACC 177230 29 100.0 32 ............................. CCTACATGGAGATCGCGCAATGACCACGGCAA 177169 29 100.0 32 ............................. CATTTGAGCTTACCGCTACTTTATGCATTCAA 177108 29 100.0 32 ............................. TCAGGCCGCCAGACAGATAATCAGACACAATC 177047 29 100.0 32 ............................. CCTTTCGCCGCTGGTATAACGCTCCTCTGCCT 176986 29 100.0 32 ............................. GGATTTATTGCCCTTGTGGTTATGGGGGGGCT 176925 29 100.0 32 ............................. TGCCTGATACGGATGAAAACCGCCGCGCTGAT 176864 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 176803 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 176742 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 176681 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 176620 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 176559 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 176498 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 176437 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 176376 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 176315 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 176254 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 176193 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 176132 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 176071 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 176010 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 175949 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 175888 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 175827 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 175766 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 175705 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 175644 28 86.2 0 ..G.........T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //