Array 1 463644-464337 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDU01000003.1 Listeria innocua strain LIN182 NODE_3_length_469744_cov_70.493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 463644 36 100.0 30 .................................... CACCTGATGCCAAAAAGAAGACCCTCCTCG 463710 36 100.0 30 .................................... TTTTATCTCGTACATCTGAAATAACCACAA 463776 36 100.0 30 .................................... CTTGAAAATGTTGTAGATTTGAATGGTTCT 463842 36 100.0 30 .................................... TTTAATTCCGCTAGGAGCAACCCAGGATAA 463908 36 100.0 30 .................................... AGGAATAATTACAAAGACAGTTCGAGATGA 463974 36 100.0 30 .................................... ATTAGTTTTTACCGTTGTATTTGTATCATC 464040 36 100.0 30 .................................... ACATCTGACATTTTTGCCTGTAGAGGACTA 464106 36 100.0 30 .................................... TGAATTTTATCTGCTGTATTTACTCTACAC 464172 36 100.0 30 .................................... GACCGTAGAATTCCGAATGGTGCGAGAGCG 464238 36 97.2 30 ..........................G......... AGAGAGGATGAACTCTAAATAATCGGAAAT 464304 34 83.3 0 ..............C.....C....A.-..-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAAAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTAAACCATTATGAAAGAGAGGTCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTGAAAACTACGACACACGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 714548-712772 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDU01000001.1 Listeria innocua strain LIN182 NODE_1_length_1023009_cov_58.3804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 714547 29 100.0 38 ............................. GACCAATCCTGATGTTTTTTAATCGTATCTTTCGTAGC 714480 29 100.0 38 ............................. ACATGTTAGTGATATATGTGTAAGTATGAAAGCTGAGG 714413 29 100.0 35 ............................. GTCGAAGATGGAATGGAAATAGACGAACTTGCGGG 714349 29 100.0 36 ............................. TACACACAAATATCTTTTTGACTCATCTTTGTTGCC 714284 29 100.0 35 ............................. GCTATTTTGATTGAAGTAGCGTTTATTAGTAATGC 714220 29 100.0 36 ............................. ATATTTATTGTGTTCGTAAACAAGTATTGCTGTCCC 714155 29 100.0 34 ............................. TTGACATCCGATAAATCAAAGTTCAGTGCTTTTC 714092 29 100.0 37 ............................. GTACCTCTAAAATGGGGAAATGTTCTTGTATCTCATC 714026 29 100.0 35 ............................. TATGAATGAAATAAGAACTGTATGTTTTGTCTACG 713962 29 100.0 34 ............................. GTTTCATATTTTAAATATGTGGATGCATTCTTAA 713899 29 100.0 37 ............................. CGGAAGATTCATCTGCTAATACGCCTAGATTGTCTGC 713833 29 100.0 34 ............................. AAAACCTTGTATAAACCGTAAGCAGCTAAACCGA 713770 29 100.0 36 ............................. TCTTCAGCAAAATGTTGAATGTCAAACTTGCGCTGT 713705 29 96.6 35 ..................T.......... GTTCTAAGTTTAGAAATATCCCACGTGTACGTTTG 713641 29 100.0 35 ............................. GTGAAAATAAAATCTAGACATTCTAAAGCGCTTTT 713577 29 100.0 36 ............................. TAATGATCATTGCAACCGTGAATATCAGTGCAACAT 713512 29 100.0 37 ............................. ATAACCCTTTTACTATTGCTTTTAATAAATCCCATCC 713446 29 96.6 35 .......................A..... TTCGGTGTAGTAATTAATTCTCTGTAGTTACTACC 713382 29 100.0 37 ............................. TTCAGAGACATTTCTTAAAGCTTTTGAAAGAACTTCC 713316 29 96.6 34 A............................ AAACTTTGAGTTAACAACCCATTACGCCCAACAA 713253 29 100.0 35 ............................. GAAATACCTTCGATAAAGTCGCATTCGTATACATT 713189 29 100.0 35 ............................. TTTCCTTCTTCTGTTGAATACAAATGGCATTTATC 713125 29 100.0 35 ............................. GCAGTAGCAGTAATAAATGAGCTATGATGCTTGTT 713061 29 96.6 36 ...................G......... AATAAAAATACTGATTTCTTGCATTGTAACGTCAGC 712996 29 100.0 35 ............................. CAAAGTCAGGCAAGCGACGTAATACTTTTGCTTTT 712932 29 93.1 37 ........C..........C......... ACTGGTTACAACATCGATAAAACGATTTATCCAGTAA 712866 29 100.0 36 ............................. CTGAATCAGCAACTGGAACAGTATCTAAAACATTTG 712801 29 93.1 0 .......................C....C | A [712776] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTTCTACATTCTTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTTGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 730715-730165 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDU01000001.1 Listeria innocua strain LIN182 NODE_1_length_1023009_cov_58.3804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 730714 29 96.6 36 ..............T.............. GGCACTAAGCTATCTTGGTATGATAACCGGAAGGGC 730649 29 93.1 38 ..............T.A............ TTGGATTATCAGCATTTTATTAATCATTTGGGTAAAGA 730582 29 100.0 36 ............................. TGACAAAGTATCCGTGCACCAATTCCCCGTTATCTA 730517 29 93.1 37 ..............T.A............ ACAAGACGCATACAACTTTAGAGGTGAGCGAAATCGA 730451 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATTCTCCTG 730388 29 100.0 36 ............................. TGGCATTATTTTATCTAGTGAACCGGAATCTAAAGT 730323 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 730258 29 96.6 36 ..............T.............. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 730193 29 72.4 0 A.....AG......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 94.6 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCGGACTCCATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATTGGACGAATCTTAGGTCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //