Array 1 28637-31176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVE010000007.1 Lactobacillus delbrueckii subsp. lactis strain 12105 L_I_202_12105_c7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28637 33 100.0 34 ................................. AGTTTTGACACGTCGTCTTGTGCCTTTTCGCCCA 28704 33 100.0 32 ................................. AACGACACCTGAAGTCCAGGCGGATCAAACAA 28769 33 100.0 36 ................................. AAAGTGTCCGTCACCTCTAACCACGCCTATCAAGTC 28838 33 100.0 33 ................................. ATTAGTAAGCCCTCCTTGCAAGATTACATCAGT 28904 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 28972 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 29040 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 29108 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 29176 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 29244 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 29313 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 29383 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 29452 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 29520 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 29586 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 29655 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 29725 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 29791 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 29861 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 29929 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 29996 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 30065 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 30133 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 30200 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 30268 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 30334 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 30404 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 30472 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 30539 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 30605 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 30673 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 30740 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 30808 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 30876 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 30943 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 31011 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 31077 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 31144 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2060-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVE010000079.1 Lactobacillus delbrueckii subsp. lactis strain 12105 L_I_202_12105_c79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2059 35 75.0 39 .C.T.....C...C.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA G [2046] 1984 35 80.6 35 C..T.-.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA G,C [1950,1953] 1912 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 1840 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 1768 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 1689 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 1616 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 1543 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 1467 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 1390 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 1315 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 1243 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 1169 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 1096 36 100.0 37 .................................... AAAATAAAAAATATTTTTTTAAAAAATAGTAGACATT 1023 36 100.0 37 .................................... TTTTAGGAGGTAACAAAATGGAATTAGAAGAAGTTTT 950 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 874 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 797 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 723 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 20 36 97.5 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : AATTTTTGCTATTATTACTTAAACTTCCCACTTGCAAACGTGGGCTCGTACCTTGAAAATTCAATAGTTTAGCCAATAAAAAAAGCACAAGGCCTTTGTTCGCTTGATATAATTCAACTACAACATCATCAATATCAAACGAAAGGCTTGTGCTATGTCTAGTTTACCATTATTCGATACTAAGAACGAACCTAAAATTGCCCGTTCTGTTGAAAAGTTCTTCAAGGACTACAAAGTTATGGAGCTTCTCCGCAGATGTGGGCTCCGCAAGTCCAAAGGAATCCCGCTTTGGTCGATCCTTTCATACATCTTCAGTAATGTGTTTCCAGACAGAAGCATGTACATGCAACAGAAGTCTGGCAAGTGTACTTCTGGCTTCTCCAAGAACACCTACTATCGATTCATGCAGAACCCACATATCAACTGGCTTCGCCTCACTATTCTGCTAGCTGAGAGGATCGTCAATGGGCACCTGAAAGATCTGACTTCTGACCAACGTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 19648-18950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVE010000032.1 Lactobacillus delbrueckii subsp. lactis strain 12105 L_I_202_12105_c32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 19647 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 19573 36 100.0 37 .................................... AAAAAGCTGGAAGATGAAGGGCTAATTGTTACAGGTA 19500 36 100.0 33 .................................... TAGCACGCTATGAGAAGGATAGCGGAAAATTGT 19431 36 100.0 39 .................................... AAGAGTGTAAGGAAGAACGGAGGAAAATAAAATGACTAA 19356 36 100.0 38 .................................... CGCCAAAAATGATCAAAACAACCGACAAAAACGGCAAG 19282 36 100.0 38 .................................... ACTAAAGAAAAAGAATACATGACTAACTACATGAAAAA 19208 36 100.0 41 .................................... TCTACAGCGATTTACTTAAATGGTCTGGTGATGAGTTTGCG 19131 36 100.0 35 .................................... TTGTAAATGACTTAGAAGAATTCGCCCAAAATTGC 19060 36 100.0 39 .................................... TCAAGACCTTGTTTGTGAAATTTTCGTTGATACTAAAAA 18985 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 100.0 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CATTGACTGCCCATACGGCTTTCGTCTTTTTGCGCTATATGTTCATGTCAGTTGAGAAGCGAAATGATGAAGATGATAGGACAATAGGCGAGCTCTTTTATTGCATGGTAGACGAGCTTGCGGACATCACTTTCAATCACTCCCTTCAGATCATGGTAGAAGCCATGTTTGAGAGCGTGAAAGAGATCTTCCAACCGACAGAAGAGCAGATGGAAAGGTTCACCAAAGCATTCATTTCCCGCCTCCCGAAGTACATGCAGAGGCATTAACGCCATCACTAGCAGCTTAATTGAATATTTACTGGCTAAACTATTGAGTTTTCAAGGCTTCATAGTTCTTTTTGGTGTGGGAAGTTTAAGTTATTAAATATGTGCTGAGGCACGA # Right flank : AGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //