Array 1 206501-206228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTY010000002.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HAZEL-198 NODE_2_length_710762_cov_34.469857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206500 29 100.0 32 ............................. CCGTTACGGGTTAACAGGTCAATATCTTTACG 206439 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 206378 29 100.0 32 ............................. TGTTGTTTTTCTGACGGGATGACGCGTTGGGT 206317 29 100.0 32 ............................. GCGGTGTTAGCGGTGCTTTATTATCGCGGAGT 206256 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTACGGTTACTGGGCCTTAGCAACAAGATCTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTCGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCCGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGCCACGCAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAGGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACACAGTGAAGTGTCGTGTCTTGAACGTATAGGCGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216670-215847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTY010000002.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HAZEL-198 NODE_2_length_710762_cov_34.469857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216669 29 100.0 32 ............................. GAAAGCGGCGATATTTCCGGCGTATTGATCCA 216608 29 96.6 32 ............................A ATATGACATTTCGTCACGGTAATAAATTAAAC 216547 29 100.0 32 ............................. CTGGTGGAGCGCCGCGAGGAGTACCTGTCTGA 216486 29 100.0 32 ............................. CATCGGGTTAACGGTTTGTTCGTTCCCTGCCT 216425 29 100.0 32 ............................. GAATTACTGACCTGTACAAACGCTGTAGCGAG 216364 29 100.0 32 ............................. TTTGCAATCAAATAAAATTTTGTGCTTCCCTA 216303 29 96.6 33 ............................T AGGCATTTTCTACCCTGTTGGGTGCCAATACGT 216241 29 96.6 33 ...........................T. CGCTACGGCGCAACACGCGTCCAGTTCGACGGC 216179 29 100.0 32 ............................. GGCTACAAAATTGAACACGAACTGGAGTTCAA 216118 29 100.0 32 ............................. GCGCTGGCGGCGGAATGCGAGAGCAAAAAGAG 216057 29 100.0 32 ............................. GGTTCGCTTCCACTTTCCCCCGCTCATACGCC 215996 29 100.0 32 ............................. CGCGGGGGTGAGTGTGGTTATTCAGTTGGTTA 215935 29 100.0 32 ............................. GTGTGGTTCCAGGTCGTGCTCCGGGAAGGCCA 215874 28 89.7 0 .............C..........G-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTACATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTATCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGATAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 248776-250636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTY010000004.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HAZEL-198 NODE_4_length_460092_cov_27.928123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248776 29 96.6 32 ............................A TAGCGGTACGGGTTTTACCGGTACCGGTCGCC 248837 29 100.0 32 ............................. AATTCACATTTAAGAAACTGATCAAGGACAGC 248898 29 100.0 32 ............................. CCGGGCTTTGTGGTGATGAAATTCCGCTGTGC 248959 29 100.0 32 ............................. CGGTTTCAGAAAACGCAGCGCAACACACTGCT 249020 29 100.0 32 ............................. GACCCCCGGCAGACGATTGAATTAATCGATCG 249081 29 100.0 32 ............................. CAGATCGAGGTTATGCCAGGTGAGCCGAAAGA 249142 29 100.0 32 ............................. AAACGTGCCGCCGTCTGGTTAATCAGGATGGT 249203 29 100.0 32 ............................. CGATTGCCGCCGGGGTGATCTCCCTCTATATC 249264 29 100.0 32 ............................. CCTGGATATCTCTAATAAAGGTCATTTTCGTT 249325 29 100.0 32 ............................. TAATAGGTAAATTGTGAATCCGACAACAGCAG 249386 29 100.0 32 ............................. CTGTCCTGCATACGCTCTACCGCGCGCGCACA 249447 29 100.0 32 ............................. AAAAAACTATTACTCACCGCCGCGCTACTGGC 249508 29 100.0 32 ............................. GCATTGGCCCTGTTTTTGATGCGCTTCCGGAT 249569 29 100.0 32 ............................. TGGAGTGAGAGCGCTAACCTTTCTGATTGCCC 249630 29 100.0 32 ............................. TCGCACTCACCTCTCTCGCCACAAAACCACCT 249691 29 100.0 32 ............................. CCGCTGATACTGGTTCAGATGCGAACGGTGCT 249752 29 100.0 32 ............................. TGAGTATGGTGAACCCTCATCTGTCACCGGAT 249813 29 96.6 33 ............................T GGGTATTTTTGGCAAATTATCAGCGGCCATCGC 249875 29 100.0 32 ............................. CCAGTATAGATGCCCACGCATATCTGTAAGCA 249936 29 100.0 32 ............................. ACAACGTATTCAAAAAAATAGACTCCAGAGAC 249997 29 100.0 32 ............................. GTGGAAATAAAATCATCAATCATCTCAGGCGT 250058 29 100.0 32 ............................. CAGGCATTTCTGGCGAAGTCGTCCATGTTGAC 250119 29 100.0 33 ............................. GAGAGCGAGTCGCCGGCGGCTATTCAGGACAGC 250181 29 100.0 32 ............................. CTTACGGCACGGCCATAAAGCTGGCGCTATCA 250242 29 100.0 32 ............................. AAAAAATACGAATTAGTAACTGAATTATCAAA 250303 29 100.0 32 ............................. CGGAGCGTCGTAAATCGTGGCGTTCTGAAAAT 250364 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 250425 29 100.0 32 ............................. CGCCCATATACCGGACCAAGAAGTTGACGGAT 250486 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGCT 250547 29 100.0 32 ............................. CGGATCATATAGGTGAGGATTTCCTCTTTTTT 250608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //