Array 1 109113-107884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFY01000013.1 Pseudomonas denitrificans (nom. rej.) strain 466_PDEN 663_109911_1842790_274+,...,578_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109112 28 100.0 32 ............................ CAGGTCGGAGTGCTGGATCCGCGAGATCCACA 109052 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 108992 28 100.0 32 ............................ AGCAGGAAGTCCCCTTCATGGATGACCTTCAA 108932 28 100.0 32 ............................ GCAACACACCGCCGGCCAGGCCACCGAGCCGA 108872 28 100.0 32 ............................ AGTCATTTTTCACCATAATAGGCAACCAGCCT 108812 28 100.0 32 ............................ AGATAGGGCAGCCCAGGGGGCCGGCAGTCCGG 108752 28 100.0 32 ............................ TTCGACCGCGCCCTGATGCTGATCGATGGCCT 108692 28 100.0 32 ............................ TCCAATTGGAATGCTTCGCGCACGGGCACGAA 108632 28 100.0 33 ............................ AGCGTGGTCCGCCCGACCCAAGACCGTTTCGGT 108571 28 100.0 32 ............................ TATACCTCGACCAAGACCGGGGAAATCTACGC 108511 28 100.0 32 ............................ AAACTCTGCTCAGCTTTAGTAAAAGTCATATC 108451 28 100.0 32 ............................ ATGGCGCTCAACGGGTTACAAGCCGCATGGGC 108391 28 100.0 32 ............................ ACCCATGCCCAGCCCTCGGCGCGGATGGCATC 108331 28 100.0 32 ............................ ATCGGGTTCTTCTTGATCAGGCCGTCCTTCAC 108271 28 100.0 32 ............................ CGGAGCGGGGTTCGTTATTGCCGCACCGTAAG 108211 28 100.0 32 ............................ TTGATGGACATGCGCGGCGTCTTGCGGACATT 108151 28 100.0 32 ............................ TGGCACAGGCCGATGAGAGCGAGCATATGATT 108091 28 100.0 32 ............................ GCGACGAGATCGAGGACGGCGACACTACCCTG 108031 28 100.0 32 ............................ CTTGTCGCGGATGTACGCATCGCCCCAGAGGT 107971 28 100.0 32 ............................ ATCGTACCGCCGCGCTGCAAATCGAGGTCGCC 107911 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCTCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38338-39085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFY01000049.1 Pseudomonas denitrificans (nom. rej.) strain 466_PDEN 703_49419_737172_594_,...,578_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38338 28 100.0 32 ............................ ACGATGGGCAGCGGGGCGAACGCCACGACGGT 38398 28 100.0 32 ............................ TCCTCGATCAGCTCCGCAGGAAGCCCAGGACC 38458 28 100.0 32 ............................ TCGGGAGGCCGGCACCGGATGCAGTTGCATTG 38518 28 100.0 32 ............................ TTGATGGACATGGTGAGACGAGCGGACTTGTT 38578 28 100.0 32 ............................ ATGAAACAGATGCGCGCTACATCGGTCGGCTC 38638 28 100.0 32 ............................ ACCACCCGTTCCAGGCGTGCCGCCACCATCAC 38698 28 100.0 32 ............................ AGCAAGCACGCACCGGACGCCGCCCTGTGGGC 38758 28 100.0 32 ............................ ATCGTCATCCGCGGCAAGGCCAGCAGCATGCG 38818 28 100.0 32 ............................ TCATCTCAACTGCGCCAGCTCGCGCGACAACT 38878 28 100.0 32 ............................ TGCGCCGGAAAGTTCGACAACATCCTGAATTT 38938 28 100.0 32 ............................ TTGTTGGTGCGCACCGACTCCAGCAGCTTGTC 38998 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39058 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATGGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCACTGACGGGGTTCTTTAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48542-47614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFY01000049.1 Pseudomonas denitrificans (nom. rej.) strain 466_PDEN 703_49419_737172_594_,...,578_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48541 28 100.0 32 ............................ TTGCCATCGAGCCGCACCTGATCGGGCGACAC 48481 28 100.0 32 ............................ ATGTGTAAGCCTCCGGAGCCGGAAAAGCCCAA 48421 28 100.0 32 ............................ AGGTCGAGAACCCCGCCGAGCACGGCGAGATT 48361 28 100.0 32 ............................ ATGCATACGTCGAATCCTCGACACGAAACCCG 48301 28 100.0 32 ............................ TACCTCTCTTAATACTCTGCCAGCGGACATAG 48241 28 100.0 32 ............................ TGCTGCCGCCTGAGGCAGAGGGCTATTTGACT 48181 28 100.0 32 ............................ TGAAAGCCCTAGTCCTAGAGCAATTGCAAGGG 48121 28 100.0 32 ............................ ACGATGGGCAGCGGGGCGAACGCTACGACGGT 48061 28 100.0 32 ............................ ATATAAAGAGTCATGGTGCTACGCCTCCAAGT 48001 28 100.0 32 ............................ GGCTGCCATGCATGGCGGGCGTGTTGCGGGAG 47941 28 100.0 32 ............................ TTGATGACGATAACCTTTTCCTCGACCGCCGC 47881 28 100.0 32 ............................ CGATGAAGTCGAAAAGATTGCCCGCTTCCGTG 47821 28 100.0 32 ............................ ATGCACAGCGCGTCGATCCGCGGCAGCTTCAC 47761 28 100.0 32 ............................ TTTCCTCGGTGATGCCCCGGCGAACCGGGGCG 47701 28 100.0 32 ............................ TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 47641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //