Array 1 23359-33324 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXX01000010.1 Thiohalocapsa marina strain DSM 19078 NODE_10_length_96776_cov_29.6679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23359 32 100.0 35 ................................ GTCGGCGGGCTCCCAGCCCAGGCGGCAGGTGGCAG 23426 32 100.0 33 ................................ CTCGCCTACCTGAAGGGCATGGTGATTGCCGGC 23491 32 100.0 33 ................................ GCCAGCTACCGCAATGTGCGCGAACTGTGCGAC 23556 32 100.0 34 ................................ AGCCCAGCGTGAAAAGAGCGAAGCAAGATAGTCG 23622 32 100.0 32 ................................ CCCGCCTACGCGCCAGCGCACAAGACCGGCGT 23686 32 100.0 35 ................................ CAAGTTATGAATACGCCGGGGCTATCGCGGCCAGG 23753 32 100.0 33 ................................ GCATCAACGGCGAACTTGCGCTAGAGCACACGG 23818 32 100.0 36 ................................ TACGTCGCCACCAGCAATACCGGCGACTGGGAGGAG 23886 32 100.0 34 ................................ GACACCATGCCGGGCCGCGGCGGCATGCTGGAGA 23952 32 100.0 34 ................................ TACGAAGGGGTCAAGGTGCCGTCGACGCAAGCCG 24018 32 100.0 33 ................................ ACGCTGGACACCACGGCGCACATCGCCCGCATC 24083 32 100.0 34 ................................ ACGCTGGACACCACGGCGCACATCGCCCGCATCT 24149 32 100.0 33 ................................ CAGTTACGAGGGTACGGGCGAGCATGATGGCGC 24214 32 100.0 35 ................................ TTTGGGGTGAATATGTGCGCCGCTGGCTTTACAAC 24281 32 100.0 34 ................................ TACGAAGACTATCTGCAGCAGATTCACAACGCGC 24347 32 100.0 34 ................................ GTGGCGCAAGTCGTGCCACCGTAAGTCCTCGATG 24413 32 100.0 34 ................................ TTGTACATGAGGCTGCCGACGGCCCACGGGGTTG 24479 32 100.0 34 ................................ AACGTTTCGATAGGCGCGCCGCCAGTGCTACTCG 24545 32 100.0 34 ................................ CTGGTCCGAGAGGGACGATCGCAGGTCGGAAAGG 24611 32 100.0 32 ................................ ATCCAACCAACTCCCGGCACGGGCACCCAACA 24675 32 100.0 33 ................................ ATGCAGACCAACTCTTGATTTGGGCTAGAAGTG 24740 32 100.0 34 ................................ GCGAGGAGATCATCCGGCTTAATGCGACCGGCGA 24806 32 100.0 34 ................................ ATCAAAGACGGCTCAGAAGTGGCGCATCGTTATA 24872 32 100.0 33 ................................ GATGGCGTGGAGACGCTGCCATGAAATGCTGTC 24937 32 100.0 33 ................................ ATGTCTGACGGCGAAGTGACCTATACGGCAGGA 25002 32 100.0 34 ................................ AGCAAAGACGCGACCCGTAGCGCAAAAGCCACCG 25068 32 100.0 34 ................................ GACGTGCAGCTCGCGGGCGCGCTGCGGGCGGTAG 25134 32 100.0 35 ................................ ACGCGAAGGTCAAAAATCGGCGCAATGATGCGCTG 25201 32 100.0 34 ................................ TGCTCCACAGCAAGAGCAAACCCAGTGCCTTACT 25267 32 100.0 34 ................................ ATCCAGACCAACTCTTGATTTGGGCTAGAAGTGC 25333 32 100.0 32 ................................ TCGACCTTGGCCCGCCGGCTACGCTGACGGAC 25397 32 100.0 34 ................................ CAGCCGCAGAACTTACCACGCCCAACCATCAGTG 25463 32 100.0 35 ................................ TCGAATCGCTGCGAGTTTCTGTTCGCCGTGCCCAC 25530 32 100.0 35 ................................ CAGAGGCTGCTGTTCCAGAGGCGCAATCAGTGTCG 25597 32 100.0 32 ................................ TGCAAGCCCGCCGTACTCGGCGCAGGCTACGG 25661 32 100.0 33 ................................ CTGGACATCGATTATTGATGTCTATCAACTGAA 25726 32 100.0 34 ................................ TGGATAACGATAACCCATTGTGGGATTGGTACGA 25792 32 100.0 33 ................................ TCGGGTGTCTGGGTGGATGCCATAGGCCACGAA 25857 32 100.0 33 ................................ GCATCGGTGGCGCCTGCTTCGCCGCCAAGTCGC 25922 32 100.0 33 ................................ GGGTTTATATACCCGCTGGAAGCAGCGCGCCCC 25987 32 100.0 34 ................................ ATCTCTCGGGCGCAGACCTGGCGGCGCGATGATA 26053 32 100.0 35 ................................ CCCGCAAACCTGGCCGCCGCAGCTCAAGTCATCAG 26120 32 100.0 36 ................................ CACGAAGAGCGTGTTTTGGTCAGCGGTGGCCCGGAT 26188 32 100.0 35 ................................ TCTGACCCCCGAGTGCTCTCGGTAAACTCAGGCCA 26255 32 100.0 35 ................................ CAGTCTTGCAGGTCCGGCGCCATGGAGATCTCCTC 26322 32 100.0 35 ................................ ACCGATATTCTGGCCGCCATCGAAGACGCCGAGTG 26389 32 100.0 33 ................................ CCTGCGGGCAACAGCGACCTGCCGCTTGATGAG 26454 32 100.0 33 ................................ GGGATCAATACCGAGAAGATCCCACCGGAGCTG 26519 32 100.0 34 ................................ CGGCCTGCTCTACAGCGCCTATCTCTACGCCGCG 26585 32 100.0 33 ................................ CTGGCGGATCTCGCTGATCACTTCAGCGGGTGC 26650 32 100.0 32 ................................ AGCGCATGAAGTTGTCCCGGGCGAGGTGGTAG 26714 32 100.0 33 ................................ CTGTCTGCCTGGTCACTGCCACAATCCGCGATC 26779 32 100.0 35 ................................ ATTGATCACCTCGCTGTCAACGGCAAACCCAACAA 26846 32 100.0 32 ................................ AGGACGTTGAGGGCTACCGGCGTCAGTTTGTC 26910 32 100.0 34 ................................ CTTGGATCATGGTGCAGCCCGACAGGGCGATCAG 26976 32 100.0 32 ................................ AGCTACTCGAAGAGCGGCTTGCGCAAACCGGG 27040 32 100.0 33 ................................ AGCTACTCGAAGAGCGGCTTGCGCAAACCGGGC 27105 32 100.0 34 ................................ CACGAAGAGCGTGTTTTGGTCAGCAATGGCCCGG 27171 32 100.0 34 ................................ ACCAACCAACCGACGTGGCGGGCCAGGAGTTCAC 27237 32 100.0 32 ................................ CATTTGCCAAAGCTCACGCGGGCAGCATTGAC 27301 32 100.0 34 ................................ CATTTGGTTGATTATTGATTGATTGTTGTTTTCA 27367 32 100.0 33 ................................ GTGTGCTCGCACTGCGGCGCAGACGGCGTGCAG 27432 32 100.0 35 ................................ AAGGGGTCGGTGTCCAGCAGAAGGGCGCCGGGCGG 27499 32 100.0 33 ................................ AGTTTATATTCCGCAGCAATGTCGGCGGGCAGA 27564 32 100.0 33 ................................ CATCATTATCTCCTCAAGTTGATGCGCCTTCCT 27629 32 100.0 33 ................................ CATGCATCCTCATCCTCGTCGAGCTTGCGGCGA 27694 32 100.0 33 ................................ TAGCCATGGGATGCGCTCGATTGCGTCCTTGAG 27759 31 96.9 35 ...-............................ GTAGTTGGTGGCGGCAAAGGCGCGGGCTGCGTCGG 27825 32 100.0 34 ................................ AAGAAATCAGCTGCGGTCGGCGCGACTCTCCCGC 27891 32 100.0 34 ................................ CGGATGTACTGGATCGTCGTCACTTGCTCAAGAG 27957 32 100.0 35 ................................ GCTGCCACCATTAAGCACGCGCGCGAGATCATGGA 28024 32 100.0 34 ................................ GCGCTCTGCCTTTTTTGTCTGGCCAGTGATCAGG 28090 32 100.0 32 ................................ CTTTGAAGGCGCCAAGCAGAGCGCCTTGCCAT 28154 32 100.0 33 ................................ ACAGGCTGGGGCAATCCTCGGCCTGTCACCCTG 28219 32 100.0 34 ................................ CAGGTGAACCTTTTAGCAACGAGTCATCAAGACG 28285 32 100.0 34 ................................ TGGAAGGTCTATGGTTACAACCAGCCGGAGACGA 28351 32 100.0 33 ................................ CTGTTGAGCCGTCGAACGGCAATACCTCCGCAG 28416 32 100.0 35 ................................ TCGCTTGCTGTACGGACACTTGATCTCTGCGATAG 28483 32 100.0 34 ................................ AGAAGATCCGTGTCGAGGATCAAGACCAGAAGAA 28549 32 100.0 35 ................................ GTCGATCTCCTCGTTGCAGTGGTGGCAGCGGTAAG 28616 32 100.0 35 ................................ TTCAACACCGTCTGGGGCTGGAAAGCGGGCCTCGA 28683 32 100.0 33 ................................ TACTTTTGACTCAACCGGCAGATCATCATCATA 28748 32 100.0 34 ................................ ATGACGCAATAACCTGCTTGCGGTGCGCTACCAA 28814 32 100.0 34 ................................ GCTATCTAGCGCCGGTGCACTGGATCAAGCCCAG 28880 32 100.0 33 ................................ AGATCAGCCGCCAACACCTGCTCGAAGCCATCA 28945 32 100.0 35 ................................ CGGAGGTGGGTTATCCGATGCCAGAGGGTGGTCTA 29012 32 100.0 34 ................................ CGCCGAGATCAACAGGGTCTTGCACCATCTGTCG 29078 32 100.0 35 ................................ CTGCGTCTCGGCATCTAGGCTGTTGTAGCTGTCGA 29145 32 100.0 32 ................................ TCGCAGCGCTGCAGCCGCGGCACAATCAGCGC 29209 32 100.0 35 ................................ CGCGTCAGCCAGCAGGCCAATGGCCTCCTCCCAGT 29276 32 100.0 34 ................................ GCTAATTGACGATATTAACCAGCTTACGTATGAG 29342 32 100.0 34 ................................ ATCGCGAGCATTGCGCTTGCTGTCTCTGAATCAA 29408 32 100.0 34 ................................ TGCGCCAGCTCGCCGGCCTTTTCCATCTCGCCGC 29474 32 100.0 34 ................................ CGCGACTCCGGCTCGGCCTGCACCATGTTGCCGA 29540 32 100.0 35 ................................ AACGTGATTATGGGCGGCGCGTCGGCGCCGCTTAT 29607 32 100.0 35 ................................ GCCGAGATGGCCAACGCCATCGCCACATCCATCGA 29674 32 100.0 35 ................................ GTCAATGCATCTGTTGCGCCAGGCGCCGAGACATG 29741 32 100.0 33 ................................ TGCCGGGAAGCCTCCAGTGCGCAGTGTTGGTAT 29806 32 100.0 33 ................................ TAAGCTGCTCACAAATATCAACAACAGCACGGC 29871 32 100.0 34 ................................ GGGGGGACGGGGCCTCGCCGGTTGGCGCGCTCAT 29937 32 100.0 33 ................................ TGCAACACGGTGCTCGGCGAGCCATGGGATGAG 30002 32 100.0 35 ................................ GTCGCCACGCCGTGGCGTTATGAGGAGACCGTCAT 30069 32 100.0 34 ................................ AGCTTGCCGTGCTGCGCGCCGCCGCCGCCGACTA 30135 32 100.0 35 ................................ TGCAGCAGCGACTGCATCCATTGCATTGAGAGATT 30202 32 100.0 33 ................................ CTCGCGGCCCCTGCGCCGCTGCCGCGCCGCCTG 30267 32 100.0 33 ................................ TTCGCCTGCCAGCTCGCCGGCAGCGTGCCGTAG 30332 32 100.0 34 ................................ AATGGCCGCGTCGTGTGCCGCCTCAGCGGCTCGG 30398 32 100.0 34 ................................ TGCACGACCTGCATAGGTGTCCTCAAGCAGCGGC 30464 32 100.0 34 ................................ CGTGGTGATGCGGCCGGCGCGCCCTATTATTCGG 30530 32 100.0 34 ................................ AGGCCTAATCTTGATCCTATCCCTGCGATCGCGG 30596 32 100.0 35 ................................ GTGGTCGTCGGTGAAGACTTGGCAGATATGTGGGA 30663 32 100.0 35 ................................ AATCATGGCATCATTGCAGCCAAGGATCTCTGCAT 30730 32 100.0 34 ................................ GGTTCGACGTGAAAAACGTCCCTGTGGTGCTCTG 30796 32 100.0 34 ................................ GCGCCATGGCCAACGCCGCGCACGCGCATCCCCT 30862 32 100.0 34 ................................ GACGAGCACGAGCGGCGTTTGGTGCACAAGGATG 30928 32 100.0 33 ................................ ACGTTGTGCGGGCACAGATTGAGACCTTCCTCG 30993 32 100.0 33 ................................ ATCCTGGCCGACGAGATCCTCGCCCGCCAGGAC 31058 32 100.0 34 ................................ CTCGCCGGAATCGGTTGGGCTCCGCGCAGCACGC 31124 32 100.0 35 ................................ CTGTCCAACGAGCGCATGCCCGTTGTGCTCGAGAA 31191 32 100.0 32 ................................ GACCCCACGCAGAGCGACCCCAAGATCCGCTG 31255 32 100.0 34 ................................ ATCGCCGAGTGGCGCGACGGCGAGATCGAAGGCC 31321 32 100.0 33 ................................ ATCTTAGCCTTGTGCTGTTTCCGTGCGGCATCC 31386 32 100.0 34 ................................ GTAGCTGGAAACCAGAAAGCTGCCAGACAGCCCG 31452 32 100.0 34 ................................ CCGCTCAAATCGATTGTTGACGTGACGGTCTATG 31518 32 100.0 34 ................................ AGCATCCAGGTCTTCGGGCAGGTTGCTATAGCGG 31584 32 100.0 34 ................................ GCGTGTTATCAGGGAGTGAGCGTTACCAGGCAAT 31650 32 100.0 33 ................................ GCGTGCGATCTCCAGCGGGTCGGCGACACGTTC 31715 32 100.0 34 ................................ CGCCTGACACGTTCGCGGCCATCATGGCGGCCAG 31781 32 100.0 34 ................................ TTTAAGCTCTTTCATCCCCTGATAACGGCTCCAC 31847 32 100.0 33 ................................ TTTAAGTTCTTTCATCCCCTGATAACGGCTCCA 31912 32 100.0 33 ................................ TCGACGCCGCCCAGGCCCGTGCCGAGCGCCTCG 31977 32 100.0 34 ................................ TGCGTGAAGTAGCGGTACAGGAACGCATCACGCG 32043 32 100.0 33 ................................ CCTGGGTGGTGCCGATGGTTGCGTGCAGTTGCA 32108 32 100.0 35 ................................ GCCGACCTGCACACCCCCGTCATCGCCAACCTGCG 32175 32 100.0 33 ................................ CACGTGACCCGCGCTCGGAGGCCTACAAGGCTG 32240 32 100.0 34 ................................ AGCCTGCCGCGCTGCCTGGTCGCCATCGACGCCA 32306 32 100.0 33 ................................ GGTCTTAGGCAAGGGCGGTGGTGCGCTGGCGGA 32371 32 100.0 34 ................................ GAGTGCAGCCAGGGCAGCAGCCCGTAGCTCACGC 32437 32 100.0 32 ................................ CAATGGCTGCGGGTCGCGTGGTTGTAACCCTC 32501 32 100.0 33 ................................ AGCCGATTGGTCAGTAGATCACGCAGGTCCTGC 32566 32 100.0 34 ................................ CCTTGGGATTGACCCGTATCGTGCCCCCGGTGAT 32632 32 100.0 34 ................................ GGGATCAGGACCGATGCGCTGTAGTAGGCATCGC 32698 32 100.0 34 ................................ CGGTGACGGTGTCGCCGTGGGCGATGGGGGTGAG 32764 32 100.0 33 ................................ AGGTCAACCCAGCGACTCCCGAGCCGCCGAGAG 32829 32 100.0 34 ................................ ACAAACTACTCCGACGCTCTGCCAATGTCGGAGG 32895 32 100.0 34 ................................ CAGGCTGCTGTCATATTTTATCGAGCACCTTCGG 32961 32 100.0 33 ................................ CAGCTAAGCCACAGAATCCAAAAGGGGTTTTAG C [32972] 33027 32 100.0 36 ................................ AATCCACTCCTCGTCATCGATGGTCGGCGCGAGGGC 33095 32 100.0 34 ................................ TGCGGATCTCGGGCGCGATTTGCAGGAGGATCTC 33161 32 100.0 34 ................................ GGCAAACATCCGCCGCCGGGTTTGAGATTATCGG 33227 32 100.0 34 ................................ CACTTTCCGAAGCTGACTCTGGCGGCGTTGACGA 33293 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ==================================== ================== 152 32 100.0 34 GTCGCCCCCCCTGCGGGGGCGCGGATTGAAAC # Left flank : CCCGCGTTCGTCTGGCGTTGAGGACACGGCATCATGATGGTCTTGGTCACTTATGATGTCCGCACTGACAGTGACGGTGGCGAGAAGCGGTTGCGGCGCATCGCAAAGGTCTGTCAGGACTATGGGCAGCGAGTGCAATATTCCGTTTTCGAATGCCTGGTCGATCCGGCGCAGTGGACCTACCTGAAGCAACAACTGCTTGACGAGATGGATCCTGAGCAAGACAGCCTGAGGTTCTATTTTCTTGGTGCCAATTGGAGACGGCGCGTCGAGCACGTCGGCAGCAAACCCGGCTACGACCCTGAAGCCCCTTTGATTCTGTAGGCGCGAACCCCAAGCGCCCAAGTTTTCTCCAGTGGGTTCGCGCAGTTTTTTGCACTTTTAAATCAATAGGTTACTTGCAGTCAAGCAACCGCTTGGTGTAGCGGATGCTGGAATCCAACTGGGTTCGCGAATTTGGCGGCTTTACGCGTCTTGATTCAAAGCGTTAGGCTTGCGAG # Right flank : CACACCCAGGCCGGGTGACCGCGGGTGATCGCTCACCCGCGGTCACCCGGACACCGGTATGAGTGGCGTTGGGCGGGTCCTCTGGTTCGATGCCAAGTACAAGGCGCACCTGCAATTGCTCTCGCGTCATGGCTGGGGCGGTCTTGAGGAGGCAACGCGCGACGCACACCGGTCGGATCTGCACCAGGCACTCGCTTATGCGGCGCTGGACGCAGTAGACCGGGTCGATTCAGTGTTGGACTACCCGGATTTGACGTCAGACGGTGCTGCGCAACCTGCCATAGCCTCGGTAGCGGCTGGCCGGCGGCGCGTGCGTCTCTTGCTTGCTGGTCTTCCGTTTGGGTTTCGTTCCCCCGCGCAGCGTGAAGCCAAGCTAGCTGAATGGAGCGCCCTGTTTTCCGGCTAGGTTTGGTGACGCGTGCCCTTACAGTGTTTTCAGGGCACTCGGGCATATTCCGTGACCTGCCTTGGGATTGCCAAGGAGAAGTGACGTGAGCAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCCTGCGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //