Array 1 126921-126019 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLC01000075.1 Escherichia coli strain LTSIAB126 NODE_205_length_258071_cov_56.989967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 126920 29 96.6 32 N............................ TTGCCCGCGCAATTCCGGGAGCATCCGCAATT 126859 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 126798 29 100.0 43 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACNNNNNNNNNNAT 126726 29 96.6 32 ............................A TGCGGATTACCGGCAAAACATGGGAGCAAACC 126665 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 126604 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 126543 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 126482 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 126421 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 126360 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 126299 29 100.0 40 ............................. CTAACGCCACATTGGCGGAATTGGCTGCTGNNNNNNNNNN 126230 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 126169 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 126108 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 126047 28 72.4 0 .AA........C..T....T-.G.....C | C [126022] ========== ====== ====== ====== ============================= =========================================== ================== 15 29 97.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGNNNNNNNNN # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153158-152627 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLC01000075.1 Escherichia coli strain LTSIAB126 NODE_205_length_258071_cov_56.989967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 153157 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 153096 29 100.0 32 ............................. TCCACGCTGTAACGGCCATCATTAAGTTTAGT 153035 29 100.0 38 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATNNNNNNNNN 152968 29 96.6 32 N............................ GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 152907 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 152846 29 100.0 40 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGNNNNNNNNNN 152777 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 152716 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 152655 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================== ================== 9 29 99.2 34 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTANNNNNNNNNN # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTTTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAGAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //