Array 1 38-402 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000032.1 Thermococcus sp. JdF3 NODE_33_length_420_cov_0.880546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 38 30 100.0 36 .............................. ATTTACTAACCTCAAGTTACTAAAACCGACAAAAAA 104 30 100.0 39 .............................. GCATCAAATTACCTCACTCTTGACCTTGACGTTTATAAG 173 30 100.0 37 .............................. CGAAAGAGATTGAGAAGAGCGAAAAGAAGAGCAAGAA 240 30 100.0 36 .............................. AGAGGCACTTCACGACAGCATAATCAGCCACGGCCA 306 30 100.0 37 .............................. GCAAAAAAAGGTAAGGAGGGATGTGGAGATGGCGGTT 373 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 100.0 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : GGGCCGCTTGCCGAGCTTCTTGAACTGCTGTACCTCCG # Right flank : CCGACAAGTTGAAAGCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 64549-62915 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000002.1 Thermococcus sp. JdF3 NODE_2_length_457002_cov_15.466092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 64548 30 100.0 36 .............................. AAATAATCGCGGTGACGATAGCGAACGGCACGCGGA 64482 30 100.0 36 .............................. TACAGCTTTGTAACGTTCTCTGGTGGGGTAAACTCT 64416 30 100.0 38 .............................. TGTGTTCAAAATTTACTTGAACAGGACTGCGCTGAATA 64348 30 100.0 37 .............................. GATACTCTTATGTACTGCGAGCTACTGTCGTTTATGC 64281 30 100.0 37 .............................. GCCTCGACTGGAAGAAGTACGGTAACGATCTTCGCCA 64214 30 100.0 38 .............................. GAGCTCGGAGAGATCTAGCAGCAGGTCCTTTTCGATGT 64146 30 100.0 36 .............................. CAGGAATGTGGAAACTTCTATGGACTGGGAGCAGAC 64080 30 100.0 38 .............................. TAATTATGCAATTCAACAATTATGTAATCAAATAACCG 64012 30 100.0 38 .............................. TCGCTTCGACCGGTGCAAGGTAGATGACGACGGCGTGG 63944 30 100.0 37 .............................. CGAGAGCCGCGTTCTCCTGCTTGAGCTCTTCGATTTG 63877 30 100.0 37 .............................. TCCCCAAAGCGATTAGAGAAGCCCTAAACATAAACAA 63810 30 100.0 37 .............................. CGTGTTTTGATTTGACAAAAGTTCATCCAATAGTGTA 63743 30 100.0 35 .............................. GTCGAGAGGAAGTTCCAAAGCAGGACGCCGACCAG 63678 30 100.0 36 .............................. TGTACTTCTTCATCTTCTTGTACTTGCGGTAGCTCA 63612 30 100.0 37 .............................. CAGAGGTAGTGCATGAGGGCTATGATGACGAGCACGA 63545 30 100.0 36 .............................. GGATAGGTGGTTGTGGTGGCCGGCCCTGGAGAACCC 63479 30 100.0 35 .............................. AAGAACAAAATATGGTATCGCTTCTGATGGACCAC 63414 30 100.0 37 .............................. TCAGGCTCGCGATGTTAATCGCGTTATTAATCTCGAC 63347 30 100.0 37 .............................. CGTTTACAGCGGACAGAGGCTCAAGCACATCGTCCTA 63280 30 100.0 36 .............................. TATATGAGTTCTGACGGCAGGCTGTGGAGGTACTGT 63214 30 96.7 36 ..................A........... GACGTGGACGCGACCACCGACGTGGCGAAGGAGCTG 63148 30 100.0 37 .............................. GGCGCGGGTTTCCATGCTCTTGACTGCCGCGAGGATA 63081 30 100.0 37 .............................. ACCTAGCCGTCTCCCACCTGGGCCTTCTTCCACCAAA 63014 30 90.0 38 ...............CAT............ GTCATAAGGTAGTTGCTGAAGGCCATGTAAGCGATTGC 62946 30 83.3 0 .............C.CCA.........G.. | GA [62920] ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.8 37 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Left flank : GAGTACAACCCGCGGATAAGGTACTGATCGGGTGTCATCACATTCTTCCACCCCATTTCAAGCCCCTCGACTTTAACCGCCGTTTTCTGTCGAAACAAAGCTCTCAGCGGCCTTGGGAAATCGATTTTAGCATCCTTCGGGCCGTAACTTTTTGTTGCATTCTAGTCAGCACTTGGTAACGAATTTTCTTCGAAGTTCTGAACCGAGGAAGGGCGCTGTTGGAATACACTCCTTCCGTGCACAAACCGGTTCATTTCTGTTTTTCTGTCCTGAAGAGGGTTTTCTAGCGTTTTGGGACGCCGTGAACTAACGGGAAATCACGTGCAGGTTCCTGTTCATTGGGGAGAAAACGGCCCGGGAACGGTGTTTTGGTCCAAACGTGTTCACAAGCCCCTTGAATTCAGGACGTTTGAGGCCCCTTTTCCGGTGGTTTTCAGAAAGGTTTAAATATCCGAGACTGCATAGGCCTTTACTGGGCCAACGGGCGGAATTCCCGCCCT # Right flank : AAAATCAAAGGGAAATCACTCCCATTCTCCCATGTCGAAGGGATACTTCGTCTTCAGCACCGCTATCGTCATCAGTCCCGCGCCTATGTACTCCATTATGATGTCCCTAATCTTGTTGTTTATCGGCTCGTCCACGTGGGGCAGTATGGTGAGCGAGGCGACGAGCTCTATGAACTCCCACAGGACGCCGATTATGAGAAGCGCCCCCATCGAGTACTTGACGATGGTCTTTGCACTCCAGCCCTTGTTGTTGATCCCGGAGTATTCGAGGGCTATCTTGGCGAATATCGTCCACATCATCAGGCCGCCGAGGGAGTGGCCGATGATGTCGCCGTTCTCATAGACGTTGTACAGGTCAACGTTGAGTATTGGAACGTTGAGAAGCGTCACGTGGAACAGGAAGAATATCGCGACGGTTATCATGACGCCGTTGTCGTATATCGGGCTTATCCACGGCCATATCCTTCTGCTCGGGTTGGGATAGAACTTCCTGACGGAGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 217952-216105 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000002.1 Thermococcus sp. JdF3 NODE_2_length_457002_cov_15.466092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 217951 30 100.0 38 .............................. CCCATGAGGAGGACATTGAAGACGCTAAGAGGATTATC 217883 30 100.0 39 .............................. GGGAGACTACCCCTGCCTTACCCCTCTCCGTGCCCGTAA 217814 30 100.0 37 .............................. CAAGACGAACGCAGAGAGCGGGAACGTGGAGATACCG 217747 30 100.0 37 .............................. TTTAATCGTGGGGGTGATTATACTCCTCAGTTTTACC 217680 30 100.0 37 .............................. TGAGGATGATCATCTTGCTCGCCTTCATGCCTCACCC 217613 30 100.0 36 .............................. AGCTGGCCGATGCCGAGCTTCTCCGGGACCTCTGAG 217547 30 100.0 37 .............................. TGAGGATCTCAAGGAGTTCAGTAAGGCGCTGGAGAAG 217480 30 100.0 39 .............................. GCGTAGAAGGTCGCCCTGTCGCGGGTGAGGTCTATGAGC 217411 30 100.0 34 .............................. TGCTTTTAGTCGGCGTTATCGTGCCCGCAGTCTT 217347 30 100.0 38 .............................. GAGGACTTCGAGGGTTTTGTTTTGTATCTTGATAGGGT 217279 30 100.0 36 .............................. GACTAAGATTTTCTTCTCCTCCAGGGCTTTAAGTAT 217213 30 100.0 36 .............................. AACTGCGTAGTCAAACCAGTAATTTCCAGTCCCTGA 217147 30 100.0 37 .............................. GACGGAAGAGGTCACGGCTATATGTGACGAATGTTCA 217080 30 100.0 36 .............................. CTCGGTTCTAAGGGCTTCTATCGCTCTGATGGTCTC 217014 30 100.0 35 .............................. TATATTTTCCCCTCGACCTCCAAATCCATCTTGAA 216949 30 100.0 36 .............................. AGCGAGGGCTCTTACACGCTCGAACTCACCTGGAAC 216883 30 100.0 36 .............................. TAAAACATATAAGTCCTGCAGGCAAGTATAATAATG 216817 30 100.0 35 .............................. CTCGGGCACGGTGCCCCTCCCGGCCCGGGAGGAAG 216752 30 100.0 37 .............................. CTGTTTGTATGAGCGTGTGGGGGTATGTGGGTGTTGG 216685 30 100.0 38 .............................. TTCCTGCTGTATCTCACGTTTTCGGCGATTTTGCCCTC 216617 30 100.0 37 .............................. TGGAGCCGGACGAGGGCTACGAGCTGGACATCACCTA 216550 30 100.0 37 .............................. TCTCACGAAAGTTCGCGAGAGTGCATGAAAATGAACT 216483 30 100.0 38 .............................. GAAGGTCGAGGAAAAGGCGGAGGAGCTCGGGGTTTTAA 216415 30 100.0 36 .............................. CTAGCGATTTCTCATCTATGAAAATCTTCTTATCAC 216349 30 100.0 36 .............................. ACAGTTCAACGTTGGAATGATGTATACATGGTCGTG 216283 30 100.0 37 .............................. ACGGCTCTGTCTTGGGCTTCTCGGTCTGTATGGCGAC 216216 30 93.3 52 .................T...........C TCTATAAAACCCCCGCGGAAGTTCGAGGGGTGTGGGGGACCGAACGTCCCCC 216134 30 83.3 0 CGGA.....G.................... | ========== ====== ====== ====== ============================== ==================================================== ================== 28 30 99.2 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AGAAAAAGCACCCCAAATCTGCCGGTGGGTCGAGTATCACGATTAAACCCCGTGTTCTCCAAAGCGGGGGCGTTTTATCGCTCTTTTCTGGGAAAATCCCGCAATCAAGTCTCTGGAAGCCGGAGTTTATACTTCTGGAGTTGTGACATCATGTTGCGTTTTATTTACAATATTATAACGAATTTTCTTCGGAATGCCGAAAACAGCCGTAATGGGGGCCCAGAAACCGATTTTACCTGTGGAAATTTGCTTTTTTCGTTATCCGGCACATTGTGACGCACCATTGGTGATTCAGAAGGCTTTCTCAGGTCAGGAAACTGCGGGCATCTCCACCCTCCCCAAAAAAGCTGGGTTTGGAAAGGGGTTTTTCCAGTCAGGCACGGTTATGCATCCCTGGAATCCTCCCCCGGTTCGACCGCTTTTGGCCCGGTTTCCAGAAAGATTTAAATATCGGCGCCATACAATAACTCCATTGGGCAAACAAACGGAATTCCCGTCCT # Right flank : CAAACATCGTGACTCCGGGTGGGGAGCCGTGGTTCGAAAAAAGTGGAGGGACAAAGGGAGGACAGACCCGGCTGCGCGGGACCTTGTAAGGCTGGCGGAGATGGGCTGGATAGATTTTGAAGAAATAAGAAGACCAACCCGTTTCAGGAAGTTCCGGGTGGAATGTAATCCAGATCACGGGGGAGAGGCTAAACCCTGACCCTCTTCCAAACCGTTCCCTGCGGGGTGTCCTCGAGCTGAATGCCCATCTCCCTGAGCTCTGCCCTTATTCTGTCGGCCAAAGCAAAGTTGCGCTCCTTCCTGAGCTGGGCGCGGACGTCAATGAGGAGCTGGATAAGGGCCTCCTCCTCGCCCGCCCTCTGCTCCCTGAAGTAGTCCTCGAAGATGCCGAAGACCTCGCTTACAATCCTGAAGAACTCCAGCGCCTTGCGAAGGATGCTCTCCTTCGGCTTTTCAACCTTCGTTAGATACCTGTTGACCGCGTTGCTCGCCTCGAACAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 111930-111673 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000003.1 Thermococcus sp. JdF3 NODE_3_length_377999_cov_12.909697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 111929 29 100.0 51 ............................. GGAACTTCATAAAGATCCAGGAGTAGCTCCTAGTCGCTTCTCGAACACTTC 111849 29 100.0 46 ............................. AAACTACTATGGAAAACTCATCCTTCTCTATAACTTCGAATCTCAT 111774 29 100.0 42 ............................. CCCTGTCGTAAACAGCTTCTTCCCAGACCCACTCTCTCATAG 111703 29 89.7 0 A........................C..G | CC [111677] ========== ====== ====== ====== ============================= =================================================== ================== 4 29 97.4 47 CGTTTCAGAACCACATAATGTTTGGAAAC # Left flank : ATTTCTCTCCTGAACGCTTTTTTCAGCTAGAGAGGCTCTAAGACAACTTTTCGCCTTTTTACATTACATAGAAGTAAGACCATGCACACGTTTGAAAACAGAGCGTTATAGCACCACCAGAACCCTAGAAAAGCCCTAAAAATCCTCTTTTAGCTGGGAGGAGCATTTTCTACCGTTTTCCAGACGGAGCTTGAACAGGGTCTTCTGCCGTCTCAGTTGAGCTTTTGGGGGCTTTTCGTGGGAGTCTGGTGGAGTGGTTTCTAGCGAGAAGTGCTTGTTTTTTCAGCGGACGGTTTTGATTGCCCTGCCAATGGTCTTCCCGGTTGTGCACCCTCCAATAAGTTTTTCGGGTTCTTCTATTTCTTAAACCCGGTTTTTACAATATTGGGTAGTTTGAAAGGAGCTTTCTGTGCTCTTTTGGCTGGCGGCCTTACGTAACCGCAAAATTTATATAGGGGTTTGGCACTACCCTATTTGCCCAAAAGGGCAAAAAAGTTAAC # Right flank : GTTTTTATCCCGGGCTGTACACCCTTCTTCAAGCTAATGGAGGGAGCATTGTGAAGTACCCTCTCTTCATAACCGACCACGGGAGGCTTGAGAGGCAGTCCGGTTCCCTCGTCTTCGTCGGCAGGCTTGAGAAGAGAACCATACCCCTCGCCCAGGTGAGCGAGGTTCACTGCCTCGCGAGGGTTTCCCTGACGAGCGGGGCCGTTGAGCTGCTGAGCGAGAAGAGAATTCCAGTTCACTTCTACTCCACGCGGGGCGATTACAGGGGCTCCCTGATAAACGACGCGTCCCCGAGGGCAGGCTCCACCTGGCCCAGGCAGAGCACCACCTCGATCCCGAAAAGAGGCTCTTCATAGCCCGGGCCATCGTCCAGGGGTATAGACCGAAAAGTTTATAAACTCCGAACTCACCATATCACCCGCGTTTCAGAACCTCCGTTGAGGATTCGCCCCGTACAGTGACTCTTCTAGCAGGGCAGCGAGACCGGCTCAAATAAAGGG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.14, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 122421-122177 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000003.1 Thermococcus sp. JdF3 NODE_3_length_377999_cov_12.909697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 122420 25 96.0 46 ...............G......... AAGTCCTTTTGGCCTCCTCAACTAGGGCCCTAAGCTCCTCGGGAAC 122349 25 100.0 48 ......................... AACCTGACGACAACGATGTGTTCCTCGATTTCTCTCCTCTCCTCGAAG 122276 25 100.0 50 ......................... AACTCGACAAGGGTGAGCCACCTCACCGTCTCGACGAGCGCGTTCTCCTC 122201 25 96.0 0 ...............G......... | ========== ====== ====== ====== ========================= ================================================== ================== 4 25 98.0 48 GTTTCAGAACCACATAATGTTTGGA # Left flank : GATGTCGGAGAAAGTGAAGAACTTGAAGCCCTTCCTGTCGTGAAGATCAGAGTAATCCGTCCCGTTGAGGTGGGTGTATATCATCGCCTGGATGGTGTGTTTTCCAACGGCGTAGAAGGGGAAGCTTTCCTCGGGCTCCAGGTCGAGCTTTATCCTCATTCTGAAACACCTTCTCACTAAAAGCTGGAGGGATAAAAAAGCCTTTCGGCCCGGGGAAGAACTGGGTAAAGATGAGTACCGCCCCTGGATACTCCTCTGGTTTCTTGTTTCTCCGACGGGCGTCCCTGATTGCTCCCTCAATGTCTTCCCCGGCGGTGTTCTCTTCACTGGCCTCTTCAGGTTCTCCTATTCCCCGGGCGAGGTTTTTACAACCCTGCGTGGTCTGGGAGGGGTCTTTCGGGGCCCCTTCCCCGGGGTTCCCTCCGAGGCTTTTAGTGGGCGTAAGGTTTATATCGGAGTTGGAGTTACTCCTCTTGCCCAGAGGGGCAAAAAAGTTAACC # Right flank : CGCTAAAATCCGGGGTATCGGGAGATGGGGCCTCAAGCGCCCCCGCGGTAGGTTTGGTGTGTTCTGGAAGCTTTCCAGGTGCGTCGTGGCCTCGAAACAAAAGGGCGTCTTCTGGCGGTGGCGGGGCCGAGTCCGGGCTCCGGCCACCCCAAAAGGCAGAGCCGAGTAACCTTGGGCCACTTCCCCCTCCCCTGGCAATGTTTCCAAAAACCTCTCTCACGGATTACAACTCCGCTGAATTGGACTCATAGCTCCACAATTTTGAAGCTGGGAACGATCTCCCTTAGGTTCTTCGCACCAACATAACCGAAAAACTTTTTTATTTCCGGTACAATAAAGCGCGCAGGTGCTTCCTGATGCTCAATGTGGCTTACTCTTCCTCCCGGGGGTGTTTCGATGTATGAAGCGACCTTCGAGCTTGAAGCTATAACGCCGGTTTTCATGCGCGGTGCGGATCAGAGAAAGGCCGAGTTCCGCTCCGCCAGCGTCAAGGGCGTGAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGA # Alternate repeat : GTTTCAGAACCACATGATGTTTGGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 166128-166664 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000003.1 Thermococcus sp. JdF3 NODE_3_length_377999_cov_12.909697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 166128 28 96.4 50 ........G................... ATGAGGGCCTCTCTAAGAATGGTTTTCGCAAGGTCATACTGTTCATTGAG 166206 28 100.0 43 ............................ TACGAGCTCCCCTACACCTTGCGACCACAAACCAAACATATCA 166277 28 100.0 45 ............................ TCAAACACGCTCGCACTTCTGAGGATCATCAAGCAGACAACGAAG 166350 28 100.0 46 ............................ CTGGAAGTTCTTGACTGCTGAGGAGACTTTTCCGAAGCTTTGGCGG 166424 28 100.0 45 ............................ TCCCTCTGGGCCTCCATGATAAGGCTCCTGACATTAACCTGTCCG 166497 28 100.0 37 ............................ GTTTCTTGAGCTCGCTAATAATGTAATTTAAAGCCCG 166562 28 96.4 47 ............T............... GAACCGTTGCCAAAGTGTTGGAGAACTAGCTCGTCGTTTTCATCTAT 166637 28 92.9 0 ..........................GT | ========== ====== ====== ====== ============================ ================================================== ================== 8 28 98.2 45 GTTTCAGAACCACATAATGTTTGGAAAC # Left flank : AACGCTTTTCTCGGCCAGAAAAACGCTAAAGCAGATTTTCCCATTTTTACATTACATAGAAGTAAAATCGTGCACACGTTTGAAAACGGGGCGTTATGACTTCTATATAACCATAGAAAGGCCTTGAGAATTCCCCTTTAGCCGAGGGGAGCATTTTCTACTATTTTTCAGACGGGCCTCAAACGGGGCTCTCTGCCGTCTCAGTTGAGCTTTCGGAGGCTTCGCGCGGGAGTCTGGTGGAGTGGTTTCCACTGGTTGGTCTTTGTTCTCCCTGTGAACCGTTTAATCCGCCCCGCTGGTCCTCTCCCTGGCGTTATCTTCTTCCCTGGTTTGTTGGAGCTTTTTCTTTCTTTTTCGGTTTTCTTACTATTTTAGATGGTTTGTGTTGGGGGCGTTTAGGGTTTTTGTTCTGGTGCTGTTTTCTGAACTTCTGGTAACCGCAAAATTTATATGGGGATTTGGCGTTACTCTATTTGCTCAATAGGGCAAAAAAGTTAACC # Right flank : TTCCTATTTGCTTTTCTTGCCTAATCTCTGGGCTCTTCCTCTGCCTTGAAGAAGGGACTTTCAAAAAATGTGGTTCCCACTATTATAAAAACGGAGAGCTCACCCCACTTCCACGACGTACTTTCTGTTTCCCTCCTCAAAGCCCCTGAATGAGCCGAGTTTGAGTCCCAGGAGGGCCTTCTCGACCTCAACGACCTTCATCGAGGCCAGGTGTGTAACGCCGCTCCCCCTTAAGAACTCCGGGAGGAGCTGGCCGGTGGGGCCCGTCAGGACGAAGAGCCTGGCCTTCTTCGCCCTGTCCAGGAGCATGTCTATTGTTCCGTTCACGAGACAGCTCGCGCTCGCTATCACCGCGTCCATCTCGGGGAGGAGGTGGTACTCAAGGGCGTCGCTGTAGGTGTCCCTGTCCCAGAGCTTGGCGTTCCTCTCGAAGACGTACACCCTGTGCCCCTTTTCGCGGAGCTCCCTTACCAGGGGAGGCATGTTCCCAATCATCGCTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 225060-228184 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000003.1 Thermococcus sp. JdF3 NODE_3_length_377999_cov_12.909697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 225060 30 100.0 35 .............................. AAGCGGGCGACGAACCAGTCCTTGAACTCCCTCGC 225125 30 100.0 35 .............................. GAGCATCCTGGGCGCCATCGACAATGAAGAGGCCC 225190 30 100.0 37 .............................. GTTACGGGAAGGGGATTATATCAGCGTGGAGGGGAGC 225257 30 100.0 39 .............................. TTGAAAAACTCGACGTTCTGGCCAAGACTCGGGGGCAGT 225326 30 100.0 38 .............................. CGGCTGGCTGCATTAGGCAGGAAGGGGGCGTTATCATC 225394 30 100.0 36 .............................. GCTCTACGCGAACGAGACTAAGACTGTGAGCGGCTG 225460 30 100.0 37 .............................. TCGTATTTGAGGAACGCGAGGAGGTTCTCCCAACCGA 225527 30 100.0 39 .............................. AAAGTATAAGTCACTTCATAAACATCGGGTTCGAACGCG 225596 30 100.0 37 .............................. TCACGTAATCATTGAGCACCTGGATTAGGAAGAAATG 225663 30 100.0 38 .............................. ACTCTTGGGACGGAAGTCCGAATCGGCTCGAATCCAAA 225731 30 100.0 38 .............................. ATTTTGAGAGTTCAACCCCCGTAGCGTTCACGATTTAT 225799 30 100.0 38 .............................. ATTTTGAGAGTTCAACCCCCGTAGCGTTCACGATTTAT 225867 30 100.0 36 .............................. TGGGTTCAGCCGTTCAGCTATCTGGCCGTTGAGGTC 225933 30 100.0 37 .............................. CGTTAATGTAATGGCTTATCACATCATCCAAAAGCGG 226000 30 100.0 37 .............................. TGCCCAGTATCTTTTCCGCGTATTCTATCCTCGACCT 226067 30 100.0 37 .............................. TTATCTTTTTCAACTGTGCTTTGAGCTTCTCTTCCTT 226134 30 100.0 36 .............................. CCGAAGCACGAGGAGCATCAGCGCCGAGTTGGTTCT 226200 30 100.0 36 .............................. TGAACTCTTCAAAGCTCATCTCAGTTATGTGGAAGT 226266 30 100.0 36 .............................. GTTAAAATCGTCGTCATTGGGGCGGGCGGAGCTGGA 226332 30 100.0 37 .............................. AACGATTGTTGATGAGGCTCGCGTTGTAGTCTATCGC 226399 30 100.0 32 .............................. TGACACGACAATGTTAGTATTATCTCCCGTGA 226461 30 100.0 36 .............................. TATCTCCTGCTCTGTGAAGTATTCTCCGGTCTCTTC 226527 30 100.0 38 .............................. TATTTTCCGGAGATCCACTCGACTCTGGGCTTTACCTC 226595 30 100.0 38 .............................. ACTGCAAAAGCGAAGGAACTTCATCTGTAGTCCTGAAC 226663 30 100.0 37 .............................. CGGAACAGGGGGTATGCGATTTCGAGTGGTGGTTCTC 226730 30 100.0 38 .............................. GCCTTGTTCTGCAACTCGCTATAAATCCTTGAAAGCAT 226798 30 100.0 37 .............................. TTTAATCGTAGGGGTGATTATACTCCTCAATTTTACC 226865 30 100.0 36 .............................. ATATAAAGCTTTCGGTCTATGGGAGAAAAGAGAGGG 226931 30 100.0 37 .............................. CGGAACAGGGGGTATGCGATTTCGAGTGGTGGTTCTC 226998 30 100.0 36 .............................. ATATAAAGCTTTCGGTCTATGGGAGAAAAGAGAGGG 227064 30 100.0 36 .............................. GCACTAACAGTTGCGTTTGAACTTGCATCAACATAA 227130 30 100.0 37 .............................. TGTCATGCTGTACTAGTACCTGAGCACTAAGAGTGTT 227197 30 100.0 37 .............................. CCTCATGGAAGAACTGTACAAGTTCCGCAAGTTCAAA 227264 30 100.0 37 .............................. GGAGAAGAGGTTCACGAGCACTGGCATACTTGCCCGA 227331 30 100.0 37 .............................. GGAGAAGAGGTTCACGAGCACTGGCATACTTGCCCGA 227398 30 100.0 35 .............................. GGAGAAGCTTATTGACGACTTCATGAGACTTAGGG 227463 30 100.0 38 .............................. TGAGTTACAGGTTCCACAAAAGTTACTGTCATATCAGT 227531 30 100.0 38 .............................. TGAGTTACAGGTTCCACAAAAGTTACTGTCATATCAGT 227599 30 100.0 37 .............................. GAAGAGCCTGAGGAAGACGACCTCATAGAGAAGGCAA 227666 29 96.7 39 ..................-........... GGGCAACGCTTATAATCAGTTTCAGCGCGTAGTTCGTCG 227734 30 100.0 37 .............................. AAGTGGGCGATTAAGGAGATGAGGCGCAGGCTTGAGA 227801 30 100.0 37 .............................. TCACCATTCTCACTCATTATCTCCGCCGTAATGAAAT 227868 30 100.0 37 .............................. GGGGGTTCTGTCCTTTGTCGTCCTGCTTTCTTTTGTT 227935 30 96.7 40 .............................T GAGACTCCCCCAAGATCAAGTATTGCCTTGTCGAAGTAGA 228005 30 100.0 42 .............................. GAGTCTGCATCGGAGTAAGATGGCCGTTTAGTCTGGTCAGGG 228077 30 86.7 48 ...............TG......C.....C TAAACCCCAGCGAAAGTTCGAGGGAGTGTGGGGGGACGGAACGTCCCC 228155 30 76.7 0 CGGA.....G.....T.A............ | ========== ====== ====== ====== ============================== ================================================ ================== 47 30 99.1 37 GTTGCAATAAGACTCCAGGAGAATTGAAAG # Left flank : AATCTGGAAGCTGAGGGAGCTGGGATTTGAGGTTCTATCACGCTGATTTTTCCCAGATCTTGGTTCCAGGATTTTAGGTTTCTCCCCGAAATGAATGGAACCCGTGGGAAGGGTTGGAAATCGGTTTTTGTGTTTTTAGGATTGTGCCTTTTTGTTATGTTTTTGCATGCTAATGTAACGAATTTTCTTCGGAGTTTTGGGAACAGTGATGGGGCCGGTTGAAAATCGGCATTCCCTATGGAAAACGAATTTTTTCGATTTTCGGACCAATACAATGGAGTTTCCATGATTTGATGGTCTTTCATCAGCCAGGAAATCTTGTGCATGTTTTTGTTCATTGAGGTGGGGAAGCCTTGAGGTGTCGGTTTGTGGGTTGGACTCTTTTCTGCTTCCCCGAGGTTCTCCCCCCTCAGGGCTGTTTTTGGTGCGATTTCCAGAAAGGTTTAAATATTCAAACCTGGGTAGACCTTTAATGGGCAAACGGGCGAAATTCCCGCCCT # Right flank : GTTGGAACGGGCATGGAAAAGTCCGGGCTCACAGGAACTCCCCGAACAGCAGGTCTTCCCTCGCCCCGCCCGCCTTCTTGAATATCCTCTCGCTCCAGGAAACGCCGCCCACCTTCCCCGGTGAGTGGGCATCGCTCGCGAAGGTGAGCTTTATCCCGCGCCTTATGCATTCACGGATGAAGTCGATGTCCGGTACCCGGTAGCGGGAGCTTATCTCAAAGGCCTTGCCCCTCGCCTCCGCCAGATGGAGTATTTCCTCCAGCTCGTCGGCGGACGGAAAGCCGATGTAGGGGAAGCTGGCTCCGAAGTGGCCGATGATGTCAACGTTGTCGTCTTCGAGGGCGAGCTTCACCAGCTCCACGTATTCCTCCGGCCTATCGAGCCACTCGTGGACGCTCGCTATCACGTAGTCAAGCTTCTCCGCCATGAAGTCCGGGACATCGACGCCCCCTGCAGTTATGTTGCCCTCCAACCCGGCCAGAATCGTCAGCTCCGCGTCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCCAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 134045-131456 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUK01000004.1 Thermococcus sp. JdF3 NODE_4_length_245375_cov_17.334714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 134044 30 100.0 36 .............................. TCGAAAAGCGTCGCCTCGCGAGGATAATCCGAAATA 133978 30 100.0 36 .............................. CGCCGTTGAGGGTGTATGCTTCCTTAAAGTAAATCT 133912 30 100.0 39 .............................. TGTTTTCCTCCCGGACATAAAGGACGACTACGACCGCTT 133843 30 100.0 37 .............................. CAGCGAGGCGGGCATCAACTTCGCTGAGGAGCTTGTC 133776 30 100.0 36 .............................. CAGCATTGGCGTGACTGGCAAGTTCATCGACGAGTA 133710 30 100.0 38 .............................. GCTTGACAACCTCGGACTCTTCAACCGCCGCGACTGTC 133642 30 100.0 36 .............................. AGAACGAGAAGCTGAAAAAGGAAGTCCAACAGCTCA 133576 30 100.0 35 .............................. GGGAAGACAAAACCCCTGCCCAAAAGCGTTCCCTC 133511 30 100.0 37 .............................. GTCGAGCTCGCGGGTGGTGACCTCGGCCCCCTTCCAT 133444 30 100.0 36 .............................. AGTTCCCTAAAAGCCTCACGAAGCCTCTCCTCACTC 133378 30 100.0 35 .............................. CATTTTATCGCCTCCGTCTAAATCTACTCGGCGGC 133313 30 100.0 37 .............................. TGGGCGCGCTCATGGAAGCTCAGCATGGAGTGCGAGG 133246 30 100.0 37 .............................. GTGTTACAAGGGACATTAATAACATTGCCCAACTCCT 133179 30 100.0 37 .............................. ATGCTCATATGCATCTTGTTCTGAAAAAGAATATTGC 133112 30 100.0 37 .............................. CAAGTTCTTTCGCGAATTTAACGGTTTTTTCGTCCTG 133045 30 100.0 39 .............................. CGAATCTCAGAGTTCAACATCTTAACCTGGAGAACCTTC 132976 30 100.0 36 .............................. ATACTATCTACACATCCAACCTTTATAAACCTTTCG 132910 30 100.0 36 .............................. ACCCTCCAGATGAAGCGGAGGAATTCGACTATTTTC 132844 30 100.0 38 .............................. GCAGAACCGCGTCGAGGTCTATATCGCTGATGATCGTC 132776 30 100.0 38 .............................. AAGGAGGTGAAAGCATGAGGTCATTCGTCGGTTTCGCT 132708 30 100.0 35 .............................. ACGCAATACGAACTGAGAGGGCTGAAGAGGATGAG 132643 30 100.0 37 .............................. TGGGCCGGGTGAACGGGTGCTGGCCGCTGAGGGCCTG 132576 30 100.0 38 .............................. ATAGTGAGGCCCTTCCCGGTAAATGTGAAGATGTAACC 132508 30 100.0 38 .............................. GCGCTCAAATATCAAACTAACCTCATACCTATATTCGT 132440 30 100.0 46 .............................. GCTTTCAGCGTTCGAAGTCGGAAAGCCGTATGAGTTCGTTGCAATA 132364 30 100.0 36 .............................. CGAGGGGTATAACATAATACACAGGCCTGATGTCCA 132298 30 100.0 37 .............................. TATCATGTCCAACCCCATAAAGGGGTGCGAACTGACA 132231 30 100.0 36 .............................. AACGATGCCGGCAGACTAGCCGGTGCGGGCAGACTA 132165 30 100.0 36 .............................. TGACGCGGGAAGTTCTGAGATGGGCCGCGTCCGAGG 132099 30 100.0 37 .............................. TAGCAATTGTGTCAGGGATTCCGTAGATCCCCGTCCC 132032 30 100.0 36 .............................. TAGTACTCCGAAGACCTGCTCTAAGGGCCCTGACCA 131966 30 100.0 37 .............................. GATACATTTCGATGTTTAGAGTCATGTCGCTCTGGAC 131899 30 100.0 36 .............................. TGCGGTTGTTGAGCATGGCGGAGTACTGGTTGGCTG 131833 30 100.0 37 .............................. CAGTGCATCAAGGACGCTGTGGCGAAGCGCGACATGG 131766 30 100.0 37 .............................. CAGTGCATCAAGGACGCTGTGGCGAAGCGCGACATGG 131699 30 100.0 35 .............................. AGGCAATAGTTAACCCTGAAACTCCAGTCGAGAAG 131634 30 100.0 37 .............................. GCCATCACCTACCTTAGCTTTTTTCCACCAAATATCG 131567 30 96.7 51 .............................C TCTATAAAACCCCAGCGGAAGTTCGAGGGGTGTGGGGGACGGAACGTCCCC 131486 30 73.3 0 CGGA.........C...A...G.......A | T [131463] ========== ====== ====== ====== ============================== =================================================== ================== 39 30 99.2 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AGAGCCGAAGCTTTTAGGGGTTGCGATTGTGCCGTATCACGTTCAAACGTTCAAAATGCGCAGGAAATCCAGGTTCCGGGGGCATATCCAAAAACGCCGGCCGGTTAGCTCTCAGGAGGCCTTAAATAACTGCAGGTTAGTGTGTACCATTTTGTTACTTGTTTTTGCTGAAACATGACGAAATTTTTTCGGAACGTGGGAGAAAGCCGTAAAGGTCCTCAAAACCAGCCATATCCCGATAGAACAAAATATTTGGTTGATTAAAGTTAGTTAACCCACGATTTAGGCCAGAGGGTTGATGTGAAAGCCCTGGAACTCACGAATGAACAGATGGGGTCTGCCCAGGCGAGCCTATGCTGTTCTCCACAGGGGCGTGAAGCTCCAAATAGGGCCCGGCTTGAAGATCCCGGAGGGCTTCCCAAAGCCCCCTCCAAAGAAAGGCTTATAAAAATAAACGCATCTTATTCCTTTGTAGGGCAAAAGAAAGTAAAAGCCGCCCT # Right flank : TAGAGGATCAGAAGCTACTCCCTCTGCGCAAGCTCCATCTCAAAGACCCTGTCAAAAACCGCCTTGTGGTTTCCGAAGGCCTCAAACATTCTGCCGGAATAGTTCTCGGAGGCGGTCTCCAGGAACAGCCGCAGATTCCTGCCTATTTCCTCGCTCACCGGGACGTGGAGGGGTGAGGGTTCGTAGTAGTCGAGGCCCTTCATGAGGGCCGTTGAGAAGTACCAGAGCGTTTTCCTGACCTTCCTGCCCTTTATTGTGGAGAAACTTGCCTCCATGCAGTTGAACGCCGCGTGAAGGAGGACTATCATGTCGATCTCGACGCCGCGCTCCAGGAGCCTCTTCCTGCCGGCATCCTTTCTGAGGTCCGTTATCCTGTAGCCGCTTCTCGTCTGCTCATCGTAGGGCACCTCAATGCCGTAGATGCCCTCCACCCGGGGGTCATAGACAAGAACCTCGGTTCCTCCGACGATGTAGAGCTTTCCGTCGCGAACCTCAACGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //