Array 1 6151-278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXEN01000040.1 Xanthomonas oryzae pv. oryzae strain DXO-50 contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 6150 31 100.0 35 ............................... TTGACCATCGCGCCGATGCCTTACTTCGCGCGCAC 6084 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 6018 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 5954 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 5888 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 5823 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 5757 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 5690 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 5624 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 5559 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 5493 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 5428 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 5363 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 5298 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 5232 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 5167 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 5103 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 5038 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 4972 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 4905 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 4839 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 4774 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 4708 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 4642 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 4577 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 4513 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 4448 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 4383 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 4317 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 4251 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 4185 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 4119 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 4052 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 3985 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 3919 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 3852 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 3787 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 3722 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 3658 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 3593 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 3526 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 3460 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 3394 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 3327 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 3261 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 3195 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 3126 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 3059 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 2994 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 2927 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2861 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2796 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2730 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2665 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2602 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2538 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 2474 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 2408 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2343 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2278 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 2213 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 2147 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 2082 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 2017 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1951 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 1886 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1819 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1753 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1684 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1618 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1554 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1488 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1424 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1359 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 1294 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 1228 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 1160 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 1094 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 1028 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 962 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 897 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 831 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 765 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 700 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 635 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 570 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 505 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 439 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 373 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 308 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 90 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAACCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //