Array 1 28464-29711 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUL01000020.1 Pseudomonas dryadis strain P6B NODE_20_length_99613_cov_15.155419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28464 29 100.0 32 ............................. CCTTTCCGCCGCTGCTCAGGCTCGCTTTGATC 28525 29 100.0 32 ............................. GCGGTGGACGATTCGCAGATGGAATAACCGCA 28586 29 100.0 32 ............................. GTCGTTGTTGGTGCGGCCTCCCGCTACGGGGA 28647 29 100.0 32 ............................. TCATCCTGTCCCATTGTCCCGACGCCCCAGGC 28708 29 96.6 32 ............................T ATCCGCCGCTTGCTTCGCCGTTTTTATTCATG 28769 29 100.0 32 ............................. ACTTGGCAGCCGGTGTTGTTAGCGCCCTAAAT 28830 29 100.0 32 ............................. TCGACGGGCGAAACGTTCGCGTGTGGATCGAG 28891 29 100.0 32 ............................. ATTGTTTCATAATGAAGATCAACTGCTCGACC 28952 29 100.0 32 ............................. CCATCCGGCAGCCCTCCGCTAAATGAGAAATT 29013 29 100.0 32 ............................. CTGCTAGCTGGTGAGTGGAATCAGCTGTTCAT 29074 29 100.0 32 ............................. ACATTGCCGAAGAATTGGGCGTGACGGGTGCG 29135 29 100.0 32 ............................. CATGGTCGATGATCGAGGCGCGCATGACTGGA 29196 29 100.0 32 ............................. TGTTTCCTGCCACGTGAAGAGTCCAGAATCTG 29257 29 100.0 32 ............................. ACGCTGCCGATCTCGCCGTCGCGGTTCTTGCG 29318 29 100.0 32 ............................. CCTCTCGCATAGCCATAGACGGGGCTGCGGAT 29379 29 100.0 32 ............................. AATTACCAGCAGTGGGCCGCCGGGCGCAAAAC 29440 29 100.0 32 ............................. CCCCCAGCGACACCGCCAAACATTGGGTCAGG 29501 29 100.0 31 ............................. GTTGTAGAACTGCTCCGGTTCGTCATTGGCC 29561 29 100.0 32 ............................. AAAGAATTGCTGCACGAACTTGTCATGATTCT 29622 29 100.0 32 ............................. ATAGTCGGGAAACCGACCGAGCTGCGGCACAA 29683 29 89.7 0 ............CC.............G. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : AAGACAGCATCCTGCCGCGGCTGTACCGCGAGGCACCGGTCAACTCCACCTGGGAGGGCTCGGGCAATGTGCAGTGCCTGGACGTGCTGCGCGCCCTGTCCAAGGAACGCGGTGTGCTCGATGCGTTGTTCGCCGAGTTGGGCGACGGTCACGGCGAGCCCCGGCTCAAGGCCCATGTCGCGCGGTTGCACAGCGCCTTGCAAGACCGCGAAGACAGCCAGTACCGCGCCCGGCAACTGACCGAGGACATCGCCGTGGCGCTGCAGGCCGGGCTGTTGCTCGAGTCCGGCAACAGCCTGGTGGCCGATGCCTTTATCGCCGCTCGCCTGGGCGAAGGCGGACGTGTCTATGGGACCCTGCCGCGCGGTATCGACGTACAGGCGCTGCTGGCGCGCAGTAGCCCCTATCCGGCCTGAGAACAGAGCGCTCTTTGCCAAGGTAAAGTCGGTGGATTTTCAGCAGTCTATTTTTTCTTTCAGGAACAATTGGTTACGCTAAGT # Right flank : GTTGTGGGGCTTGCCCTTGGACTTCTTGCCGGTGGGGCGCTCCATCGGGGCCGAATAGACGTTCGGCAGGTCCTCTGTTGCCAGCTCTCTGGAGTGCTGGCACTTTGCATCGTTTGCCGATGCCATGTGATCTTCGACGATCCACAGGAGCCTTAGATGAACGGATTTTCCAGTTTGAGCGATCAGGCCCGCCGGCTCTGGGCCAAGAGTGGCGATGGTTTCGGCCATGGCGTACTGGCCCACCTGCTGGATGTGGCGGCGGTCGCTGAGCGCATGCTGGCGCATGAACCGGCCAGCAGCCTGGATTGGGCGGCACAGGCTCTGGGTATGGAGCGCCAACATGTAGCGCGCTGGATCGCCTGTCTGGTCGGACTGCATGATTTCGGCAAGGCCATCCCCGGTTTCCAGGACAAATGGGTCGAAGGCCGACAGGTGGATGAGGCGCAGGGCCTGTCCTTTCCGGCGCGTTCGCTGGGCGTGACCGACCATGCCTGTGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39144-40148 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUL01000020.1 Pseudomonas dryadis strain P6B NODE_20_length_99613_cov_15.155419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39144 29 100.0 32 ............................. TCGCAGACCAATGTAAATGCTGCTCGCCTCAA 39205 29 100.0 32 ............................. TCACCGGCACCTACCGCTCCGGCATCGCGCAG 39266 29 100.0 32 ............................. CGCACCAATCGCGCAGACCAAGCACATAACGG 39327 29 100.0 32 ............................. GCTGTTAAGGCTCCTGTTGTTCAGTCTCAGCA 39388 29 100.0 32 ............................. GCCGATGCCGTCGCCCTGGGCGGTCTCGTTCT 39449 29 100.0 32 ............................. GCATATCAGGACTACCCGTACGACCTGCCTAA 39510 29 100.0 32 ............................. CCATACCCTTGGGGCTGTCGATGAGCCGGCTG 39571 29 100.0 32 ............................. CCCAATGATCGCATGATCATCAATCCGGTCTA 39632 29 100.0 32 ............................. TAATCGTTGCGCGCTTTTACTGCATCCTTGAT 39693 29 100.0 32 ............................. CTACTCGACATTCTGCTTCCACGCTTCATCAC 39754 29 100.0 32 ............................. ACAGGTGCATAAACCGGGCGCGATTGTTTAGC 39815 29 100.0 32 ............................. CCCTGGATCAGGTACAGCTCGCGAGGGGTGAG 39876 29 100.0 32 ............................. AAGGGGAGAACTGCGGCTCTGTTAATGGTGAG 39937 29 100.0 32 ............................. GAGGAATGCGTCCATATCGTTCGTTGCAGGTT 39998 29 100.0 32 ............................. CTGCTCGAGATCGCCGCCTACCGCGAACTGCT 40059 29 100.0 32 ............................. GAAACCAAGGTCACCAGCGCCGGCATCGTGGT 40120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCATCATCGAAGAGGTGCTGGCCGCTGGCGGCATCTCACCACCCGAAGCGCCGCCCGAGTCGGTACCGCCGGCCATTCCCAATCCTGAAAGCATCGGCGATGCCGGCCACAGGGCGCAGTAGTGAGCTTTCTGGTCGTGGTCACCGAGAACGTCCCGCCGCGCCTGCGCGGACGTATGGCCATCTGGCTGCTGGAGGTACGCGCCGGGGTCTATATCGGCGATGTCTCCAAGCGCACCCGGGAAATGATCTGGCAGCAGCTCAGTGAGGGGCATGAAGACGGCAATGTGGTGATGGCCTGGGCCAGCAACCATGAGTCCGGTTACGAGTTCCAGACCCTGGGTCCCAACCGGCGTTTGCCGGTAGAGTTCGACGGTCTGCATTTGGTCGCTTTTCACCCCCTGGACAACCCCGATCTTTAACAAGGAAATGTTGGTAGATTTTTAGCGGTCGGTTTTCCCTTTTTGGATCAGTCGGTTACGCTAAGT # Right flank : GTACAACTCGAAGGACGTGCTGCTGAGCCTGATGTGTTCCCCGTGTCAGCGTGTGCCGTCCTTGCACGGGGGGCCGCCTTCCTGGGAGGAGTGTCAGCGGCGGTCTGAGGGATTAGACCGCCGTCGCTTCCGGTGCGTGGCCCTTCAGCCCCGCGCCTGAACCGTGTGTCGTTTCCGTCGTCTCGCGGCCATCGCCGTGGCCACGAAGATTGCCGCGGCGAGGGTCAATGCCAGCGGCAGCCCCTGTGGGCGGTCGCTCATCAGGGCGCCGCTGAGCACGGGGCCGAGCAGGCTGCCGATGCCCCACAGCAGGCCGATGCAGGCGTTGGCGGTGACCAGGTCGGGGCCGCGGAAGTCCTGGCCGATCAGTACCAGGGCCAGGGTGTAGATACCGCCGGCCGCGGCGCCGAGGACTAGCAGAGCCGGCCATAGCAGGGTGCGCTGTTCCATCAGACAGGGCAGGGCCAGGCCGAGGCCCAGGGTCAGCACGCCGCAGAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //