Array 1 228518-224481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPQ01000003.1 Serratia marcescens strain 1756 NODE_3_length_392985_cov_32.6624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228517 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 228457 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 228397 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 228337 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 228277 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 228217 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 228157 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 228097 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 228037 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 227977 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 227917 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 227857 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 227797 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 227737 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 227677 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 227617 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 227557 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 227497 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 227437 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 227377 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 227317 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 227257 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 227197 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 227137 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 227076 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 227016 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 226956 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 226896 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 226836 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 226776 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 226715 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 226655 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 226595 28 100.0 18 ............................ ACCGCAAAGGCAATATGC Deletion [226550] 226548 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [226540] 226487 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 226427 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 226367 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 226307 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 226247 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 226187 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 226127 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 226067 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 226007 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 225947 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 225887 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 225827 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 225767 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 225707 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 225647 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 225587 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 225527 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 225467 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 225407 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 225347 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 225287 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 225227 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 225167 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 225107 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 225047 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 224987 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 224927 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 224867 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 224807 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 224747 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 224687 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 224627 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 224567 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 224507 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 239741-237367 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPQ01000003.1 Serratia marcescens strain 1756 NODE_3_length_392985_cov_32.6624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239740 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 239680 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 239620 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 239560 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 239500 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 239440 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 239380 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 239320 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 239260 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 239200 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 239140 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 239079 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 239019 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 238959 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 238899 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 238839 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 238779 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 238719 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 238659 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 238599 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 238539 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 238478 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 238418 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 238358 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 238298 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 238238 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 238178 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 238118 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 238058 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 237998 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 237938 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 237878 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 237817 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 237757 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 237697 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 237637 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 237577 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 237517 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 237457 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 237397 28 96.4 0 ....................A....... | G,A,A [237370,237374,237376] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //