Array 1 1847457-1849886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018787.1 Oxalobacter formigenes strain HC-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1847457 28 100.0 32 ............................ AGATTATTGATATCGGACTCATCTTTGAATTG 1847517 28 100.0 32 ............................ AAAAGGGCAAACCAATACCAGATATAAAAAAA 1847577 28 100.0 32 ............................ TTTTCTCATAATATAAATTATGCGAAATTTAT 1847637 28 100.0 32 ............................ AATGATCATTCCGTGTTCAACAAACGAATGTG 1847697 28 100.0 32 ............................ TTATTCGACGGCCCAAGATGTTGCGTCTGCAT 1847757 28 100.0 32 ............................ TGTTTATGTCGATGAAGTTTTACCCGGTGATA 1847817 28 100.0 32 ............................ TCTTAAAAAAGACTATAACACGACTTTGGTGT 1847877 28 100.0 32 ............................ TTACATGACCAAAGATCAGATCAGAAGAGGGC 1847937 28 100.0 32 ............................ TGTTCCATCTTCAAAGCGGATACTATCGCCGT 1847997 28 100.0 32 ............................ ATAAAAAAACGGGATTTCTCCCGTTTAACTTG 1848057 28 100.0 32 ............................ GATCACAGTAGCAGAAAGTTGCGAGAAACACG 1848117 28 100.0 32 ............................ AAGCGACGCATATCCAAACCACTGATTACACC 1848177 28 100.0 32 ............................ AAACGGATCAAGAACACTACCGACAGACTTAA 1848237 28 100.0 32 ............................ AGCTGTTTTTTATTTTGGTAATATCACCATCA 1848297 28 100.0 32 ............................ AGACATTACGGGTGGTCAGTCGATAACAGGAA 1848357 28 100.0 32 ............................ TAATGATTATCTTATTGTGAATGGCGTTAAAA 1848417 28 100.0 32 ............................ AGACAGAACATGGCTAGTTTCTCATGTCATCG 1848477 28 100.0 32 ............................ TTCATCCTGAGTTGTATCGCCAGTAACATAAA 1848537 28 100.0 32 ............................ GTTTGCATCAGCTGGCTTGAAAAATGAAATCC 1848597 28 100.0 32 ............................ TGTCCTTTTCTGGCGATGTCTGCCAGAAAGTA 1848657 28 100.0 33 ............................ CGTAAAATTTCTGATCTTTTCAAATTCGGCTTG 1848718 28 100.0 32 ............................ TTTAAAGAACAACAATGGATTGCAGAGTGATC 1848778 28 100.0 32 ............................ ATATGCTGCGTCTGTTGGGTCAAACGATAAAA 1848838 28 100.0 32 ............................ ATTAAAACGGCCGATTTTCAGGCTATGGGCGA 1848898 28 100.0 32 ............................ TGTTTAAGCCGGGCATGCGTGACGGTACCATC 1848958 28 100.0 32 ............................ TTGATTTGTGTGAATGTGAGAGGTTTGACAAC 1849018 28 100.0 33 ............................ TTTCCGAATCGCAGAAAGCGCAGATTGTTTCAG 1849079 28 100.0 32 ............................ AAGAATGCTCATGTTGATGACTCAGATTGGTT 1849139 28 100.0 32 ............................ AATTGAAGAAAAACCAAAAGGCCAGAGCGATT 1849199 28 100.0 32 ............................ ATAGAGCTTGCTCTTACTTTGGAGGTGATTCT 1849259 28 100.0 32 ............................ TTGAAGCATGGACTTTCCTGACCCGTTGTAAC 1849319 28 100.0 32 ............................ GATTACGGAAATGAAGGATACAAAAAGGGTTT 1849379 28 100.0 32 ............................ ACAGGGAACTGACCCCGCCGTCGCCATTATGC 1849439 28 100.0 32 ............................ CAGTTGAACATGCGCCGGATCGGAATAAATGA 1849499 28 100.0 32 ............................ AAAAGGCGGGAAAAAAGGTCAGGCACTTATCA 1849559 28 100.0 32 ............................ ATTATTGAAAACATTGAAAATATGGGATATGG 1849619 28 100.0 32 ............................ AGACTGCCGGGGAGGGAACACGACAGCGCTTT 1849679 28 100.0 32 ............................ AAGCTAAATATTGCTCTTTGGTGACACCATGG 1849739 28 96.4 32 .........T.................. CGAAGCGGGGTTTTCTCAAAAATTAAGCTGTT 1849799 28 100.0 32 ............................ TCAATGATTTGCGCGAACGTTCGAAGGATCTG 1849859 28 85.7 0 ................A....C.G..T. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAG # Left flank : CTTGCAGAAAATCGACATTCAGAAATGGTTTGTGCGTTTAAACGATTGTATCCACATTACTCCTGTTTGCAGGGTACCCCTGAACGAAATCACTGGTTATGCAACTTTCAGTCGAAAACACATTAAATCCAACGCCGAACGCCTCGCACGTCGTCAAATGAAAAGGCATAAGGATTTATCATTTCATGAAACAGTACAGCGTTATCAGAAAAACCTGGCAAAATCACCTTTGCCCTTCATACAACTTGAAAGTTTAACTAACTCTCACCCATTCAAATTATTTATTGAAAAGAAACCGGCGATAAATGCAAGCTTGAAAGTCTTTACTACTTATGGATTAAGCGCAGAATCAACGATTCCTGAATTTTAACCAAAGTTTTTTCAGATCTTTAAAAATCAAATAAAATCAACCGGTTATAAGAATATTAAAAAACTTGGGTTAAACAGTGATTTCCGGCTCAAGTTATTGTTATAACTTTATTTTTTATTTTTTATATACA # Right flank : GTTTGAACTAACCGAGACGTTTTCCCTTTCCGTTCCCCTTTTTCCCTTTTTTCCCCTGTTTTTCCTTCGGCGGTACCATAGAACAGTTGACTTCCTTCCCCTCTTTTCCAAGATAGCCGGTTCCCCATTCATACATGGATTCCAGCACAGGACCGATGCTCCTGCCGAAATCGGTCAGGGAATATTCCACTTTTGGCGGGACAACCGGAAAAACCTCACGGTTGACCAGCCCGTCGGTTTCCAGTTCCCTGAGTTGCTGCGTCAGCATCTTTGGCGTGGCGCAAGGCACTTCTTTTCTGAGCTGCGAAAATCGGAGCGTACCGGAGGTCAGTTTCCATAAAATCAGCGATTTGTATTTTCCGCCGATAAGGCTGATCGTCGCCTCCACCGGACAATGCGTCTCGATGGACGTTTTGCATGAAGAGGATGTAGCGGCTGGATGGAGGTCTTTCATGACAGTTCGGTATCCTTTTGGGTACTATATACCAAAAAAGTGCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1931033-1931780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018787.1 Oxalobacter formigenes strain HC-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1931033 28 100.0 32 ............................ TAGCTGGCATTGCGGAAAGGCTTAACAAGATC 1931093 28 100.0 32 ............................ CGGTTCGACCGGGCTGATGCAAACCTGACATT 1931153 28 100.0 32 ............................ GTCAAGAGTATTAGAATAAGTACTGCGGAACT 1931213 28 100.0 32 ............................ AGTACAACGAAACTGGCAAAAGAGTTCCCGTT 1931273 28 100.0 32 ............................ TGATCCGTAAAAAGGGCGGCATAAATAATGGT 1931333 28 100.0 32 ............................ ACGCGGATAGATTGCATGAATCAGCTTCACAT 1931393 28 100.0 32 ............................ TGAAACCGGTGAAATTATTCAATTGGTTCCTG 1931453 28 100.0 32 ............................ AGATAAAATTTATTCAATTATTGGAACAACTT 1931513 28 100.0 32 ............................ TGTTCAGAATGCTCTCGGTCAAGGTGTATCTT 1931573 28 100.0 32 ............................ GTCTGGCCAGAATCGACAGTAAAACGGTTGTT 1931633 28 100.0 32 ............................ ACAGGGCAATGTCAGGTTTGCATCAGCCCGGT 1931693 28 92.9 32 .....................A.....A CAACTATATGGATCAAGTCACTGACGCATTGA 1931753 28 78.6 0 ......T...A.AC...C......T... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.8 32 GTGATCCACCGTGTAGGTGGCTTAGAAG # Left flank : CGAAATCGCCGATTCCCTCTCCGACATCTACCAGAACATCATGTCGAACAAAATGAACGACATCATCCGTATACTGACCATCATCTCCACCATCCTGATGCCGCTGACCTTCATCGCCGGACTGTACGGCATGAATTTCAACGTTTCCGACTCTCCATGGAACATGCCCGAACTGCATCATCCCTACGGATATCCCATCACCCTGTTGCTGATGCTGGCCATTGCGCTCGGAATGATCTGGTTTTTCAAAAAGAAAGACTGGCTCTGAAACAGACCGTCATTTTTACACAGGCAAAACATTTCTTTTCGAACACATCTTTTTTGAAAGTGCAGTCCCTCTTCTCGAAGCAACGGGACACAAGCATTTGACCTTCGATTTTTTGAGAAAAATAAAAACCTTATAAATCAACAGGTTGACAACACTGATAAAAAACGAAGGTTCAGGCATGAAAAAACGGGAAAAATAACCATAAACAATGAGTTATACTGAAAACGCTCTA # Right flank : GTCATCCCCTCATCCGGAATACGAAATTCATCCCGGCCTGCTGCAAGGGTGACATGAAAACAGACTGAATAATCAGTCATTTCCGAAAAGTGCGTACGGCAGGTTCTGTGATCTGATAAATGTATCCTGAAATTTCAGGAACCCGCTTTTTCCCATTACATGCGCGACAGCACATTTAAGGTTGAGATCCGTGATTTTTTGACCCTGTATGTTCATTCCATTTGCAAAACCTGTGTTTCGGCAGAAGGTGGCGGCACGGCAGGTTTCAGAAAATCTTTGGGAATATCACACTTTTTCTTGCCCATCATGGTCGCCAGCGCTTCTTTCTCACCCCTGACATTCGCCAGTTCTGCTGCCTCAATGCCGTCTCCCTGACCATATCCCAGCCAGAAAGCCTGAACCTGACTGGATTTCAAACGCTGCTCCTGTGCAATGACCAGCATATTCTCCCTTCTCGCCATGGATGAGGCTTCAAGGGTCAGGTCATCACAATTGTATGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCACCGTGTAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCACCGTGTAGGTGGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1989233-1989920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018787.1 Oxalobacter formigenes strain HC-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1989233 28 100.0 32 ............................ AGGCCGCGCAGTAGTGAAATAATCTTTTTCCC 1989293 28 100.0 32 ............................ GGTAGGGTAGAGGTAGCCCATATTCATCGACT 1989353 28 100.0 32 ............................ TTCTTCCAGCAATTCAAGTGTATCGATATCAA 1989413 28 100.0 32 ............................ ATCAAGGAAATGGCGAAAATCGTTTTTCGCAC 1989473 28 100.0 32 ............................ CGAATAACCAGATAGGACAAGACCATCATGTC 1989533 28 100.0 32 ............................ ACACCGCAAGATTATCTATCTTATGTAATACC 1989593 28 100.0 32 ............................ GGAATACGATTCATCGCTACCCGAAAGAAATC 1989653 28 96.4 32 .............C.............. TGCTGCCAGTTCCGTTTCTTCATTACGTTTCG 1989713 28 96.4 32 .............C.............. GAAAGCCGTATGCGTTGGTTCGCTTGTGTCTC 1989773 28 96.4 32 .............C.............. AAATACATACCAGCAACAGGCAATGAGATACA 1989833 28 85.7 32 ....C......A.C......C....... GGTAGCTGACGGTGTTTAGCTCCTTCCCGCAT 1989893 28 78.6 0 ...........CAC......C..GT... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.1 32 GTGATCCACCGTGTAGGTGGTTTAGAAG # Left flank : AATACTGGGCACGCCGGAAAACCATTACGACATCATCTTCATGGACATCCAGATGCCCGTCATGAACGGCCACGAGGCGAGCCGTGCCATCCGTGACCTTGCCAGAGCTGACACTGCCAGAATCCCCATCATCGCCCTGACTGCCAACGCCTTCATCGAAGACATTGCCAAATCCACCCGGGCGGGAATGACCGGCCACATCGCCAAACCGCTCGACCCCGACAAAATATACGAAGTCATGAATCAGGTGCTTTGAAAACAGCTGTATAAAACATCGCACCAGACTTCAGTCCGTTCAAGCAGAAAATTCTCTGCCTTATCCATCTATCAAACGATAAAACCGTATACCTTCATCTCATCTTGACTGACCTTCAAAAATGCACCCCATTAAAAAAGTTATAAAAAACAATGAGTTGAAAATTTGTAAAAAAACGAAGGTCAAAGCAGTCCAATTCGCTTAAAATACTGAATAAACAAGTAGTTATCAAATTATTTGTCTA # Right flank : GCTCAAATTTCTTTTCAAGAATTGCCCTGGCAAGGTGATCCACCGTAAGTGGCTCAGAATTTCGGCATTGCATACGTTTATGCCGAATGTTAGTGATCCCCTGTGCAGCTGGCTTTCGCAATGAAACTGAATGAATTTATAAAAAAACGTATTCTGCTGATAAATTTCCACAATCAATCTTTCATTGCCCGTCTGTTTTCTCCAACAAAAAAACACATTTACACGTAAATATCTGTTTTTTCTTTCCCGCAAGCAATGAACCCGAATGTGTCATTTTATAATGAACCTGTCTCGGCAGTTTCATCAACCAATCGGATGTAAACGATACCGGTTTTCAAACCGGCCTGAACTGGACGACATATGCACATTCTGCTTGTCTCGGCATGTGAAAAAAGGGCTATCAAAAAAACAAGGGCCCTGCTGGACAGTTATGCGCTGCGTGTCGGTGAAAAAACATGGTCGACCCCGATCACGCAGGAAGCCCTGACCGAACTCCGTAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCACCGTGTAGGTGGTTTAGAAG # Alternate repeat : GTGATCCACCGTGCAGGTGGTTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCACCGTGTAGGTGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1998327-1999194 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018787.1 Oxalobacter formigenes strain HC-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1998327 28 100.0 32 ............................ AAAAGGGTCTTTCTGGATGATGAAACGATTAA 1998387 28 100.0 32 ............................ CCGGTGAAGACACTGAGAACAAGCAGCCTGTT 1998447 28 100.0 32 ............................ GAAGGAGGCGGTTGAAGATCAGCCGTGGCATC 1998507 28 100.0 32 ............................ AGCTTCGCCAGAAGTTTTAGCCCTTCTCAAAC 1998567 28 100.0 32 ............................ GTCAATCGCTGCTGTTGAACTTTTTGCATTGG 1998627 28 100.0 32 ............................ GAATGCATCGGCAGCCGCCCGGATCTCTCCGC 1998687 28 100.0 32 ............................ AAAAGAACTGAGGCGTGAACCATGACATTAAA 1998747 28 100.0 32 ............................ TTGTCATAAAATACTATTCCTTTATCGAGACT 1998807 28 100.0 32 ............................ TGATTTGCGCCGCCGGGAATGCCCGACAATAA 1998867 28 100.0 32 ............................ ATCGCCTGAACCTGTTTCTAAAGAGAAGAAAT 1998927 28 100.0 32 ............................ ACGCATCGCCGGACACCCGCGCATTTCCGTAC 1998987 28 100.0 32 ............................ TTGAAGATATCGACCAATGTCGAGGTGTTCTC 1999047 28 100.0 32 ............................ ATTCTGGAAGAATTGATCAGAAGATTTGTACG 1999107 28 96.4 32 ...................A........ ATCATGGCACCTTTTTGTTAGTCATAATCGCC 1999167 28 85.7 0 ............AC.........G...A | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTGAACCACCGTGTAGGTGGCTTAGAAG # Left flank : CCCGCTGGGCCAGAACTTTGTACGCCTTGCTGGCACAGGGTTTCAAAATCGAATTCAGCCGCAAGGAAGGCGAACGAAAAAACGACACCCTCGCCGATATCGTCAATGGATACCTCGATCACGGCAACTACATCGCCTACGGCTATGCTTCCGTTGCCCTGTGCGGCATGGGCATCAGCTTCTCACTTCCCCTTCTCCACGGAAAAACCCGCCGGGGCGCCCTCGTCTTCGACATCGCCGACCTGATCAAGGACGCCTGCGTCATGCCACTGGCCTTTCTCAGTGCCAAACGGGGCGACAACCAGAAAGATTTCCGAAATTCCCTGATTGAATACTGTCAGGACAAGGAAGTGCTTGACCTTCTTTTTACCTTCATTTCTGAGGCATGCAATAAAGTCGTTTAAAATCAACTACTTGAAAATTCATGAAAAAACGAAGGTCAAACGGTGAAAAAGGAGACAAGTCAATAATAAACAAGGATTTTTTCAAAAAATTGTCTA # Right flank : ACGTTAATAGGACGAATAAAGAAACTTCGCTGGATGAACCATTCAGCAAATAGCAAGTGCCATGTATATTTTATAAAATATTCATTCGGTTTTCCTGAATGGAACGAACTCCCGTTAACTGATAAACTTGCCATCCGGAATGTCTGACCTGTACAAAAACGGTCGCCTCTTCAAGCTATGCTATGGGAAAATTGATCATTAAAGCGGCGTTGTCCGTTTTCATCTGTTGCCTGATATACGAATTCTTCGATATCGGCACAGGTATCCCCTTTTATTCGGGCATTGCAGCGATCATCTGCCTGCAGCCGGAAATCAAAAGCACCTTCCGGATCGGCATGAACCGGACGATCGGTACCTTGATCGGCGGTTTTACGGGAATGGCGATCCTCTTCATTCTGCGGGAATTCTCCCTGTTTTCCTTTCCGACCCTTAAAAACTTCCTGATTTCCCTGTGCATCATTCCCCTGATGTTTCTGGCCGAATCCTTCAAAAGAGGCCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCACCGTGTAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACCACCGTGTAGGTGGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //