Array 1 50574-46377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000011.1 Phormidium sp. FACHB-1136 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 50573 29 100.0 34 ............................. CTAGGGGTAATGATTCCGAGGGACGACCAGGCCA 50510 29 100.0 34 ............................. GCCCAAGCCCTCAACATCTCGGCATCCGAGTTGA 50447 29 100.0 34 ............................. CTTTGACTCGATCCTCAAAGGCTTCGGGCGTTGA 50384 29 100.0 34 ............................. ATAGTGGTAATGTAGCAGTGATAGTTCCCACTGC 50321 29 100.0 34 ............................. CCTGTCATGATTTCCAGGACGGGCAAGAATTGAC 50258 29 100.0 35 ............................. CCGTACCGGGATTGCTATGAGCATACTTTCCCGAC 50194 29 100.0 33 ............................. AATGGCCTACTGCGGAAAATCCATCCCGATCAC 50132 29 100.0 34 ............................. ATTGCCACTTCCGCCCTTAACTAATGGTGGGGGC 50069 29 100.0 34 ............................. CTGCTGACCCTGCCCACGGGGCCGTTTGGGCACA 50006 29 100.0 33 ............................. GCTAGCATGGGCGTCCATGGCTACCGAATCAAC 49944 29 100.0 35 ............................. ACCAGCCAAGCCCGCCTGCTGCACCGTGCCCTGAC 49880 29 100.0 34 ............................. CTATGGGGATCGTATACCTAGAACCTGTGCAAGG 49817 29 100.0 34 ............................. TATTAACCTGGGCCGCTGCCGTTCAGCAATTCAA 49754 29 100.0 35 ............................. ACGTGCGCACGATTGAGGGCGCGGGCCTGGTGGGC 49690 29 100.0 34 ............................. CGTACGGCAAGACCTGGGAAGGGCAGTTCACCGA 49627 29 100.0 34 ............................. GTCAACGTACCCGCCGCAACTTGCACCTCGCCAG 49564 29 100.0 34 ............................. CCCTTGCGCTACAATGGTTTCAGCGATTCACCCC 49501 29 100.0 35 ............................. AGCACCACCACCCAGAGGACAAATAGATGACTATC 49437 29 100.0 33 ............................. GATAGCCTACGCCGCCTGACCAGATGAGGTAGC 49375 29 100.0 34 ............................. GCTGCTCCAAAGAGCAAGCCGACAAGGAAGCCGC 49312 29 100.0 35 ............................. GGCAGGGGTGTACTACTCTCCAGTTAAGGGTGTAC 49248 29 100.0 34 ............................. GTCTTGGGTGCGTCGCTCATTAGCCCTTCTGTAG 49185 29 100.0 35 ............................. CTGCACCCCGGTGAGGGCAACGGCATAGCGCCGAC 49121 29 100.0 34 ............................. CCGACCGGGCCGCATTGGCTATACCATTCTGGGA 49058 29 100.0 34 ............................. TAGGTTGAAGTATTGGCCATCAGTCACACGCCAA 48995 29 100.0 34 ............................. CTCAGGGCGTTTTAGTCGATAAATTAAGAGAGAA 48932 29 100.0 34 ............................. TCACTCTTCTCCTACCTTCTCGATACCGTGGAAC 48869 29 100.0 35 ............................. ATCGCCCTGTTGCTGAACAACCTAGCCGAGCCACC 48805 29 100.0 34 ............................. TTAAGCGATAGGAGTTAACGGGTTATCAGTCACG 48742 29 100.0 35 ............................. CGGCGAAGGATAATCCCAAACAGCAGGAACGCATC 48678 29 100.0 35 ............................. GCGACCTAGCCACGGTATCCGGCCCCAAGTTCCAC 48614 29 100.0 34 ............................. CCGTAGGGCAAAATCTTGAGGGCTTTCCGGGTTC 48551 29 100.0 34 ............................. CCCGTCCGGGTGCAGAACACCGGGGGGCTGACTG 48488 29 100.0 34 ............................. TTCTTCAACGACGCCACCGACGCCGCACAATGTG 48425 29 100.0 34 ............................. TTCACCCGCGTGGACTATCTGCCGGACGGTTCCA 48362 29 100.0 34 ............................. CCCGTATCGGTGGACTGGGAGGATCTAACCATCC 48299 29 100.0 35 ............................. TTATTGCTCCGGTGTCAGAGGTATGGGGTTGACAG 48235 29 100.0 34 ............................. GTTCCAACCCGCTCAGAGAAGGGGGCCGAAAAGG 48172 29 100.0 33 ............................. TTTATTGGCAAAATCAAACGCTGTTGCTGTGGA 48110 29 100.0 33 ............................. GCACCGACGCGCATGGTGGGTACTGGGTGCCAC 48048 29 100.0 34 ............................. TTGCCATCGGGAAAAGGTAGAGCGGTGGCATCCC 47985 29 100.0 35 ............................. CCCGCCAGACCTACCGCTGGGTTAGCCAAACGACC 47921 29 100.0 34 ............................. AAGAAGCCCTAACGCTAGCAGAGATCCGCGCCAT 47858 29 100.0 34 ............................. GGTTGTCCGGCATTCTGGCTGACCTAAATGCGAC 47795 29 100.0 33 ............................. GACGCCAAACTTAGGCGGGGTCGTCCCAAGTTC 47733 29 100.0 34 ............................. AAATCCCCGCTCAGGTGCTCCACGAGGGGCCATG 47670 29 100.0 34 ............................. CCTTGGCAGCAGAATGGGGTCGCAAGTGGAATCA 47607 29 100.0 34 ............................. CCGCGCCCTTGCGTTGCCGTGCCTCGGCTTCTAG 47544 29 100.0 34 ............................. GGTTTCCTGCTTACGCCTGTGAGTTTAAGGGCTG 47481 29 100.0 34 ............................. ATTGGCTAGAAGAGGATTGGCACCTAGAAGAGGC 47418 29 100.0 34 ............................. TCAGCACAGTAGGAGCGGCCATCACAGCTAGGGC 47355 29 100.0 35 ............................. ACCTGACTGAGTCGCTTGTGGCGGTGCAGCGGGCC 47291 29 100.0 34 ............................. TCCTCAAATCCTGTCGGGTTGTCAAAAACTTCAA 47228 29 100.0 34 ............................. TATGGGAGGCATCATGATCGGAATCCTCGCCATA 47165 29 96.6 33 ............................A GAGGGTTGGGTAGTTCAGTCAGCACCGTCTGAA 47103 29 100.0 34 ............................. GCGACCTGTGCCCCATACGCGACCGCTGTAGAGA 47040 29 100.0 34 ............................. AGGCACGGTCGATCAGGATTCCGGTGCAGGCTAC 46977 29 100.0 34 ............................. GATACATCGGACTGACGCCTCAAACCATTGCCGC 46914 29 100.0 34 ............................. GACGACGCAACACCCCCTTTGGGGGAAACCTTCA 46851 29 100.0 34 ............................. TCCCGTCATCGTTTACGGCTTTGCTGTTAACAGG 46788 29 100.0 36 ............................. TTCCAAAATCAACCCTACTTAGTATCCACTTGGTAC 46723 29 100.0 35 ............................. GGCGGGCCGTTACACCCTTGGCTGTTTGCCCTGGC 46659 29 100.0 34 ............................. TCCTCAAATCCTGTCGGGTTGTCAAAAACTTCAA 46596 29 96.6 36 ............................A GACGACGGCAAGGGTGTCCACCCTCACCGAGAGGCC 46531 29 100.0 34 ............................. CCGGAATCTTGCTCGATGGGATGGCTGGTTCTAC 46468 29 93.1 34 .....................A......A GAGAGAACAGACCACCCCATAAAATGCGTATGTC 46405 29 75.9 0 ....................CCATC..TC | ========== ====== ====== ====== ============================= ==================================== ================== 67 29 99.4 34 GTTGTCCCCACGCTGGTGGGGGTGAACCG # Left flank : GAAACCTATTTCGATCTTGATACCCTGGTACGCCGCAAGTGTCGAGAGCGATTTAGCGACTATCGCCTGATGAATCGCCTGGTGCAGGACGTGGATCGGGTGCTGGGTTTTGGTGAGGAGGAAGATAACGAACCCATTGCCTTCCTATGGGATGACGTTTTGGAGTGGGTGGAAGGTGGGAAAAACTGGGGTGAGGAGGACAACTAGGTGATTGTGCTCATTTTGGAGAATGCCAAACCTACACTGCGGGGTGAGTTGAGTCGCTGGCTGTTTGAAATCAAGGCTGGTGTCTTTGCAGGACGGGTATCTGCCCTGGTGAGGGATGAACTCTGGGATCTCATCGAGCAGAAACTCGGCAAAGGCTCTGCCGTGATGATCTTTCCCCAACGCGGAGAACAAGGCTTTGCAGCCCGAATGCTGGGGACTCCCTCTAGGTCTCTTGTAGACATAGAGGGGTTACTACTGGTCAGAACCCCCTAAATTCGGCTATTCTGGAATGC # Right flank : CACACCCTACCCGCTGCCCTGGTGGTTTTTTGTGGGTGGCCTCTCTTGGGCTATGCTGCTACTGCCCACACGGAGCCATGGCCATGCCTGACTACCTAAAGCCCATCAGCATTGGAGATCGCATCGACCCACCCCAGGAAGCGGAGGGGGCGCGGTTTACCTGGGTAGAAGACCACTGTGAACTAATGATTAGCCTCAGTGGGCTACGTCCAGCGGAGGTGAAGGGCGTAGAGAAGGGGGTGTTTGAGTTTGGGCTGAATGTGGTGGAGTCCATGCCCTTTGTCTGCTTTCGAGTTTTTGAGGTAGTGGGCGCTAAGGGCTTTGGGCGGCCACAGCGGGGAAAAGTAGTACTGCCCTGGCATGAATGCCCCTTCCACCTGGCCCGATTCCACCCCGATGTTTTACCCCACTTTGACGACTTCAGGACTATCCCAGAGGCCCGCCTAGGCATCATCGTCATTTTGACCGACTGGCCAGGAATGACAGTCAAAGCGCTGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCTGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGTCCCCACTCAGGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2322-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000224.1 Phormidium sp. FACHB-1136 contig224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2321 37 100.0 35 ..................................... CTTTCAAATGGCCATGATATTTTTGGCCATCATTC 2249 37 100.0 36 ..................................... CATCGATGCCTTGGGGCAAGGGGTTCGCCTCCTACC 2176 37 100.0 36 ..................................... CTGGCTCAAGCTGCATTCCTCGAAGGTTGGGGGCTT 2103 37 100.0 36 ..................................... CTGAGTGGGGAATGAGTATCGCAACTTTTTCCTTGG 2030 37 100.0 37 ..................................... CCAAGGGAAAGCGATTAGAAAATACGCTGAAGGCGTA 1956 37 100.0 35 ..................................... CGAGCCATCCAATGCAAGCCCCGCCGATGGCAATA 1884 37 100.0 36 ..................................... CAAATCGTCACTAAATCCATTAATTCCTACTTGAGC 1811 37 100.0 35 ..................................... CCTCCCAGTGGCAGGTGAGCCAGCGTTGGTAGATG 1739 37 100.0 36 ..................................... CTGCTGGGTGCCCCCACTCCCCTCCTGTCGCATGAT 1666 37 100.0 36 ..................................... CGTACACCAATTATTTTGGGAACGCGCAGGGTAAAA 1593 37 100.0 36 ..................................... CACTGTAGGCCCACACAGCGCAGGGAGCCTCAACTA 1520 37 100.0 35 ..................................... CTTACTGCGACTCTGACCCTGCCTGACCCTCAGGA 1448 37 100.0 37 ..................................... CCATCAGACAAAACCACCGGGAAGCCCAGCTTGCGGC 1374 37 100.0 35 ..................................... GAAGAGCCGTATCACCCGTGTTTGTGGGCAATTGC 1302 37 100.0 35 ..................................... GGCAGATGGATTCAAGCACACGAATAGATGGCAAG 1230 37 100.0 36 ..................................... GCTGGCAAGTCTCACTATCAACTCAAACATGCCTTA 1157 37 100.0 35 ..................................... GCTGAATCTTGGCGAGTACCCCTTCAAGGCCATCG 1085 37 100.0 36 ..................................... GGGAATTTTCCACAGTGCCCACGGGTGCCCGCTTTC 1012 37 100.0 36 ..................................... GCTCTTGGTCAGCGAGGCGACGGACAACGCCTTCCG 939 37 97.3 32 ................C.................... GGCCCTTGATTTCTTCAATGGTGAAATCTTGG 870 37 100.0 36 ..................................... GGGCTCCTTCTACTGAGGCCATCAATCCCGCCGATT 797 37 100.0 37 ..................................... GTCATCGGATATCCTCTCAAGCACCCCGCACCAGTAA 723 37 100.0 36 ..................................... GATAATGGAATTACAGATTTTTACTTAGAGGGCACC 650 37 100.0 36 ..................................... GAGTGGATTCTATAGATAGTATTTCCGAGGAAGAAT 577 37 100.0 36 ..................................... GAGCAGACTTGCACGGGATGAAGGCATGAAGCCCCC 504 37 100.0 35 ..................................... GAATGTCTTTCCCAGAAAGGGCCGACAGGGCATCA 432 37 100.0 36 ..................................... GAGCCCTGAGTAATCGGGGGGGCTGCGGTGGCCGTT 359 37 100.0 36 ..................................... GTTGAATACCAACCACCAAAAGACAAATGCTTTTCT 286 37 100.0 36 ..................................... GATTCGCGGCCTTGGCATCCTCCCAATGGCAGGTGA 213 37 100.0 35 ..................................... GAGAAATTTCGGTAACAGGGTCAACAGCCTGAGCG 141 37 91.9 0 ..................................GGT | ========== ====== ====== ====== ===================================== ===================================== ================== 31 37 99.7 36 GGTTCCAACCAACTCCAAGCCCTCTCAGGGATTGAAA # Left flank : TAAGATGGTCGTCATTCATGGTGTATTCCTGATCTGGTGGTTTACTTCATCCAGCAGAATACGCCCTTCCTTCTTTCCCCTCCATACACCAGAAATGAGCATAGCTCTGTTTTGAATGAGCAA # Right flank : TAGTGCATTTTAGTGCAGGCTAGAGGAAAAAGCCGGATGACCTTGCTTGGCCAGCTTTTCTCGGATGTTGCGATTGTAGTCATGGATGAACAACCAGATAGCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCAACCAACTCCAAGCCCTCTCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 30361-32736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000024.1 Phormidium sp. FACHB-1136 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 30361 30 80.0 42 .CTCCC.T...................... ACGGCATACCAACCAATAAAAAGAAGATCGTCGTTCTTTCAA 30433 30 80.0 42 .CTCCC.T...................... TAGGCCTCCATCGCCTACTAAAGCTTACGAGATTTCTTTCAA 30505 30 80.0 43 .CTCCC.T...................... TCCGTAGACCGTGAGAGGACTGCCCAGTAGGGCGTACTTTCAA 30578 30 80.0 43 .CTCCC.T...................... TAGCCTTATATTACGGATTGCTTAAAATTCCGGGATCTTTCAA 30651 30 80.0 42 .CTCCC.T...................... TTGAATTGTTCGCGCTACAACTTCACCGATGAAAACTTTCAA 30723 30 80.0 41 .CTCCC.T...................... GACCATTGATGGTGAACTGGGCACACTCCCTCCTCTTTCAA 30794 30 80.0 18 .CTCCC.T...................... CTACCACATCAGCGGCAT Deletion [30842] 30843 30 100.0 43 .............................. TTCCCACTCCCACAGGGCATCAATTAGATCTTCTAGGCGGCAT 30917 30 100.0 40 .............................. ATGGATAGCGAGATAAACGCCTGGGATACGTCAACGGCAT 30988 30 100.0 43 .............................. TCGCCTGTTCGGGCCGCTTCCCTAAACAATTCCTGTCCGGCAT 31062 30 100.0 43 .............................. GTGGTAGGGTTCCCTAAGCCCATAGGCTCAACTGCTCCGGCAT 31136 30 100.0 42 .............................. TTCAACGTCGCCTACTGCTGATGGACGCCCTTGGACCGGCAT 31209 30 96.7 41 .............................G GGCTGGCACCTCGCCATCTGGCTTGATTTCTACCCCGGCAT 31281 30 100.0 40 .............................. AATCGCACCAATCGGGCAAAAATACCCAGGCCTCCGGCAT 31352 30 100.0 40 .............................. GATCTTCCCTTTAATTGAAAATGCCGTCCCCAATCGGCAT 31423 30 100.0 40 .............................. CACCAGCAACGTGATCGAAATCCAAGAAGAAACCCGGCAT 31494 30 96.7 40 .............................G TGCTGAAATGCTACCGACAGCTACTCGAATCCTCCGGCAT 31565 30 100.0 40 .............................. GTTCGTTGGTATCTTTACGCTTTCTGGCCTCATCCGGCAT 31636 30 100.0 39 .............................. GATACACAGCCCCTCCGATAGGGCACCCTAAGAGGGCAT 31706 30 96.7 42 .............................T ATCGAGGGGATGCTCAGACAATGCCCAATTTTTCAAGGGCAT 31779 30 100.0 41 .............................. CTGCGGCCCCTGTGCGGCCCGTGGAGGCGTCCCCGGGGCAT 31851 30 100.0 40 .............................. GCACTACTAGAGTGCCCAGCCCGTCCTGGGCTACGGGCAT 31922 30 96.7 40 .............................T ATCGGGATGCATATGAATCCCATATTCTTATTGCGGGCAT 31993 30 100.0 42 .............................. CGGCTTGTTGCAATGGTGAGGGGGTCAGCACCCGTCGGGCAT 32066 30 100.0 41 .............................. ATCGTGCAGGGCATGGAGTTACGGCCCATTGTGATGGGCAT 32138 30 96.7 39 .............................T TTCAGCCGCAGTCACATCAAAGCCGAACCGCTCGGGCAT 32208 30 100.0 43 .............................. TCCCGCCGCCACCTTGCGGTATTGGGTGGGGCTGATCGGGCAT 32282 30 100.0 40 .............................. CACCCCTGAAGCCGTCCACGCTACTCAGCAAGAAGGGCAT 32353 30 100.0 40 .............................. CAATCCTGTTAGCGTCAATGACCCCGCCCGACTCGGGCAT 32424 30 100.0 37 .............................. ATCCAAAGCTTATTGACCCTGGAACATACGTTGGCAT 32493 30 100.0 39 .............................. GTCTGGGGCTTGCAGGCGTAGCATGACCTGGCCGGGCAT G [32499] 32564 30 100.0 40 .............................. AATCGCGTGAAGCGCCCCTTATATTCTTCAAAAAGGGCAT 32635 30 100.0 41 .............................. GAGAAGAGTTGATAAAGAATCTCGTAGTAACGCTCGGGCAT 32707 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 34 30 95.4 40 CACTAACGGTGCAGGGTGGTTGATTGTGAC # Left flank : GCAACCTGATCCAACGCCTCACCGGGGGCGACTCCACCCCGACACCCCCCACCCCCCAGGAAATCCCCCCCAAGGAGTACACGCTGAGTAAATAGCTCGCAAATAGCCCTATAATAGGTATCCGTTGGTTACAGGCCAGCGCACCTTGCGGGTGTAGTTCAGTGGTAGAACGTCAGCTTCCCAAGCTGAATGTCGTGAGTTCGAGTCTCATCACCCGCTTTTCCTATGTACAGTGACACGTTATTTGTCATCAGTGACAGATTGGTGTCGTCGAGGCCATATTAGTGTCATCGGGCCAAAATCTTGTCGTCAAACGACTGGTGACACATTGAATGTCGTTTAGCTTCTTAGGGCCAGTATTGAGATCAACTCATGCAAAGGAAGCTGACGTTCTACCTTTCAACTCGCTAAATAATTTTCCCCGCTGAAGTCTTCAGCGATAGACAGAGTAACTCATTGCGTCTGGTTGGTCGGCATAATACCCAGACAATTCCCGCCAA # Right flank : CGCAGGCTTCTGAAAGGAGCTCAAGATAAGGCTTTCAGAAGGTGTTTGCGCGGATCGCCTCATCCATCCTGGCGGTACTGGTGAGGTTGGGGGCCTTTTGACTTGGGCAAAGACTCGAAACAACCGTGTGACGGGTCGTTTGGCCTTAGCGCGGATCGAGAAGGCGTATTTCATCCTTCCGAAGACCCTCAACCCCAGTATTGGAGCGAGTTCCCCCTTGGTCGGGGGTGATTCGGTAGCCACTACAGCAGTACATCCGCACCCTTATTGCTGGGAGCGCACCTACGCCATAATTGGAGTTGCAAGCCCACCAACTACGACTTAATCTCTTCGGAGAGGCCGAAGCCCCTCGTCCGACAGCATCAGGGCGAGTAGCTACCAGGGCCAGAAAGCACGGCTGTTTTCCAACAGCCAAACTAACCCTTATTTCACACGACTCAGAGGCTAACGCATGAGTCGCGGCGCGATTGAGGCATTCGGTTGTCTAGGTTCAACGGTCG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACTAACGGTGCAGGGTGGTTGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 38215-37085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000024.1 Phormidium sp. FACHB-1136 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 38214 36 94.4 36 .......................T...G........ ATCAGTTCCAACTGAGCGATGAAGTGACGGAACCAC 38142 36 97.2 36 ...........................G........ AGACGTGCAGTCATTTTACCGTTGTTACCTTTTTTG 38070 36 100.0 37 .................................... TCTTCTGCAAACACCCGAAGCTCGAGCATTTCTGCCA 37997 36 100.0 35 .................................... CATATGTTGTGTATCTAAGAGTCATTAGATTACTA 37926 36 100.0 39 .................................... TTAATAGGAGTCATCGTTTCGACTCCCTTAACTTTCTTA 37851 36 94.4 37 ...........................G....A... AGGTTAGATGCAACGTTGTTCCAGCCGATGTTCTTAG 37778 36 100.0 35 .................................... CTAGCTTCCATTGCTACAGCTACAGCGTGAGTCTG 37707 36 100.0 35 .................................... TTATCACAGAACTTTTTCGTATCTTCAGCGAAGAT 37636 36 97.2 39 ................................A... TTGCCTGTCCCCGCGTACCCTTGCAGCCGAAAAAAGGGA 37561 36 100.0 37 .................................... ACCGTACGACTCACGTTGTACTGCTCGACCGCAGTAA 37488 36 97.2 35 ...........................G........ ATGATGTCGAAAGTTAGCATCCACGCCCATACCTC 37417 36 97.2 38 ...........................G........ AGGATTGCCTGCTGAACCTTGACGGCCTTGTTGATGGG 37343 36 100.0 38 .................................... CATTCGTATCCGGCCTTGAAGCACTCGGCGGTGAATGT 37269 36 97.2 39 ...................................T CCTATGGCGTCGGGGTCTAGTTGGTTGGGGTATTCATCA 37194 36 91.7 38 ...............A.......T....A....... GGCAGATCGATCTGTTCAGCGACTTTTTCGGCGCGTTG 37120 36 86.1 0 .C............AC...A.......G........ | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 97.0 37 GTCACGACCTTCTCCGGAAGGTACAGGTGCTGCGAC # Left flank : GTTTGGGCATATTGAGCGAGTAGTTTCATGGTTGTGCCATGCTTCGTTTTACCGTTTCGCTAATCATCCTGGGGTTGGTTGGTTGTGCCACTAGTCCCGACACTGCTTCTATCCCAACACCGCCCCCAACCCCAACACCTACGCCAACCCCTCAGGCCGTTGCCACTCCAGAACCACCCCCTACTCCCGTCTGGAAGCCCACGGGGGATGGTTGGCGAAGTCAGAGTGACCAAGACGGACGCCCTGTCTACTTTCGCAAAATCACGACGGGGGATTGTGGGATCTACGACTACTGCCTTAACTATGAGGTCACGACTGAGCAAGGCTGTAGCACACTCTACGTGCAGGCCAGTTTGACCAATGAGGCAGGGCAGAATGTGGATTGGACGAATGATACAGTTCAGGGGTTGAGGCCCAAAGAAACAGGGGTGATTTCCCTTGGGGCGACCGAGTCGGGCAGTTTTCGCCTAGACGAGGTAAATTGTCGGTGAGCACTCCCA # Right flank : ATACCAAGCTCAGGGTCTTGAACCTTAATGTCGTACAGCGTTTATTCACACATCACTGAAAATATTGGAGACATCCCATGGCCTCACTCCCCACAACCCAACCCCTCTGGTATCAAATTGATCCAGACCGCCCAGAAAGAGGTTGGATCCCCAAAACAGAACACATCATCATCAGCCCCCAAAAGCCCGAAAACAAAGTCATCCGAGAAGCCTGGTACGCCAAAAACCAACTCGCCTACGCCCCACCCTCCAAAAAAGCCACCCTCACCGCCCAAATCCTCACCCCCATCCAAGTCGGCGGCATCAGAGTCACCAACGAAATGACCCTCCCCGCCCAAATCGGCGGCTATCCCTGCATCCCCGGCTCCAGCCTCAAAGGCGCACTTCTCTCCTGGCTGCGCCGCCAACACCCCACCATGCCCCCCGAAGAACAAGCCTTCTGGCAAAGCCTCATCGAACCCAACGGGCAAGGCTGGAAACCCCGCGCCATCCGCTTTGAA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGACCTTCTCCGGAAGGTACAGGTGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8471-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000062.1 Phormidium sp. FACHB-1136 contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8470 37 100.0 35 ..................................... AGGAGCATGGACATGATCGGTTCGCCGCTGGGCAG 8398 37 100.0 35 ..................................... AGGTTCACCGTGGTATTGGTTGAGCCAATCTTGTT 8326 37 100.0 35 ..................................... GGCGGTGGATGGTGGCTCAGAGCACCCCAGAAGGC 8254 37 100.0 35 ..................................... GAAAACGGCTGGGGGAAACATGACCTTCAAATCAT 8182 37 100.0 35 ..................................... AAGCCTGAATTAAAACTAAATTCTAGTTGACACAG 8110 37 100.0 34 ..................................... GGACGTGATCCGAATCAAACAACGTAAATTGATC 8039 37 100.0 39 ..................................... CACCAGCAAGGGATCGACGCCGTTCTGTACGATCTGGCC 7963 37 100.0 40 ..................................... TTGGTGCTAAGGGCAGGGCCAGGAATCAGCCAGGGCGTAA 7886 37 100.0 35 ..................................... GTATCGAGCGCCGATACCTCCGATCCACTTCTCAA 7814 37 100.0 37 ..................................... ACGATGTCCCACGGTCGGCCCTGACCAATGTGCAAGG 7740 37 100.0 35 ..................................... TAGGGCACAATCATTAGCCCAAACCGCCTGCTGAG 7668 37 100.0 35 ..................................... TTAGCTAACAGAAACTAAAATAGGCCGTTTCGCTA 7596 37 100.0 34 ..................................... GAGTACAACGGCCACCGCTTACCCCTGCAACCTG 7525 37 100.0 35 ..................................... ACCACTGTTTCAATGGCCGGGGCCAGCGCCTGGAG 7453 37 100.0 35 ..................................... ACCGATACCCGAATGGGCGACTTCGAGTGCTGGGG 7381 37 100.0 39 ..................................... AGCGAGGCTCTAGCCACCGCCCTAACCAGACTGGATGAG 7305 37 100.0 36 ..................................... GGCACCCTTCAGTACGCCGATCCACCCAGGATTGTT 7232 37 100.0 35 ..................................... TTGGGGCGGCATCCGGCCTCAGACCTAACGCTATC 7160 37 100.0 35 ..................................... CAGAATCAGATTAATTTTGTAAACGCCAATGACCT 7088 37 100.0 36 ..................................... GCGCCAGAAACTTCAACAACGGAATTGGTCGTAACC 7015 37 100.0 36 ..................................... GCTTGCAGCATCACGCTTGCTTCTGAGGCATCACAC 6942 37 100.0 34 ..................................... CTTTTCCACGGTGGGGCACTTCCACACGCCCTGA 6871 37 100.0 35 ..................................... GGGCATTGACGACCTAAACCGAAACCTTGCTTTCA 6799 37 100.0 35 ..................................... AATTTCCCCGCCTACTATCGTCGAGGGGCATCGAT 6727 37 100.0 34 ..................................... CTTCTCTTTGCACCTCACTACATTCAGCCCTAGG 6656 37 100.0 35 ..................................... GGGAATATGGTCTGGCTCGGTGGGCAGGCAGTTAG 6584 37 100.0 36 ..................................... AGGCCGACTCTAGGGCATTGGTGAGGGAGTCCCTAG 6511 37 100.0 35 ..................................... AAAGTGCAGGGCTTTACCTGCGGGGCTAAAGCTTG 6439 37 100.0 35 ..................................... GACGGTCGGCACGGGGTAAACTCAAAAGGACGTAC 6367 37 100.0 36 ..................................... TCTGCTGGGATCGATTCGGTGGGGATTGTTGAAATA 6294 37 100.0 35 ..................................... AAACCATGCAAACGAATGGAACAAGCACAACTCTG 6222 37 100.0 34 ..................................... TGTCCTTGCCGCCCTAAGCCCTGGCGAACCAACC 6151 37 100.0 35 ..................................... GGAGCCGTGCATAGTAGGCCATGATTCGCGCCCCT 6079 37 100.0 35 ..................................... ACCGCTATGGCCATGGCGACTTGTGGCTAACGCCT 6007 37 100.0 34 ..................................... AATTGCTGTACCCTTGACTAGTTCCTTGATGCTG 5936 37 100.0 34 ..................................... TGCCAAATAGTACAGGGTTGGGGGTAGGGTCATG 5865 37 100.0 34 ..................................... AAGGCTAGAAGGCAAGATCGCCCGCCATAAGTTG 5794 37 100.0 35 ..................................... AGATAAACCGTAGCGGTGAGGGGTTGGGTTGGGTC 5722 37 100.0 37 ..................................... CACGGTTCGAGCCAGAGTACAAATGCAACCGCACAGG 5648 37 100.0 38 ..................................... TTGATTGGGAAACTGAACGGGGCTATGCCGTGGGGAGG 5573 37 100.0 37 ..................................... AGTTTTCCTCAAGCCTACAGGAAAGTATTCGCCATAT 5499 37 100.0 34 ..................................... GGCATGGCGCTGCCGGGGCTGGGCTACGGGGACG 5428 37 100.0 36 ..................................... AGCGGCCCGCCTGCATTGCTACCGAGGTCAAAGGCC 5355 37 100.0 34 ..................................... GCATCAACCTGGATAGTAACCTGACTAAGTACTT 5284 37 100.0 34 ..................................... ATCGGCTACAACAATGACAAGCTCATTCGGGCGA 5213 37 100.0 35 ..................................... TTCTAGAATCCGCTTAACCTTGCGGGAAATGTCCG 5141 37 100.0 34 ..................................... GGCATACATCACAATCAAATTCTCAGGGCGCTTA 5070 37 100.0 36 ..................................... AATTTTAATGATCGAACTCATTTGATTCACCTCCAA 4997 37 100.0 36 ..................................... CGGTTTCCCAATCAAAGCAGCGCTTACCCTCAACCC 4924 37 100.0 34 ..................................... CAGCTTGGCTATTTTGCGCCACCCCCACAACTCT 4853 37 100.0 35 ..................................... TTCCATTCGGCGCGGCCCTCGTTGGGCATCTCTAG 4781 37 100.0 38 ..................................... GTTCAAGTCCCAGGCCGTTGCCCACTCAGGGTAGAGCG 4706 37 100.0 35 ..................................... TTATGTATTGTTGCTGGTTGTTGCTAGTTGTAGAT 4634 37 100.0 38 ..................................... TGCCTCTGACCGCTGGACGATCACCGACCTGGAGAGCA 4559 37 100.0 36 ..................................... TGATTGGGGCGAGTACCGTGGCACCAGGGCAGAAAC 4486 37 100.0 35 ..................................... CGTAAGACACTGATCGCCGCCGTCGCCCGTGCCTT 4414 37 100.0 38 ..................................... GTGGCTACTGGTGCCGCTGTGGATGGTGGCACCGCCGC 4339 37 100.0 33 ..................................... GCTTAGCCTCGGCCTCTAGGCGTTGAAACTCGG 4269 37 100.0 35 ..................................... CACCACGTTTGCCACCACCCCGATCCCGGCGTTGA 4197 37 100.0 36 ..................................... GGCACCGCTACCAACTGCGCGACGGTGGCCCAGAAC 4124 37 100.0 34 ..................................... TAGTATTTGCAATACCTTTTGAGCGTGTTGTTTG 4053 37 100.0 34 ..................................... GGGCAACTGGCCCTGGTAAAACACTCGATAGTGG 3982 37 100.0 35 ..................................... CTAACCTTTGGCCTGGTTGGAATTGGGGCCAAGAT 3910 37 100.0 35 ..................................... AATCTGGCCAGCAATGGCAGGCTGTAGCAGCTCTA 3838 37 100.0 35 ..................................... TTTAAACCATTTGTCCCATATCCCATATCCCAGCG 3766 37 100.0 34 ..................................... GGAAAAAGTCAGATAGGGGATGGGAGCCTATCTA 3695 37 100.0 36 ..................................... GCTGTTGGTGCGGGTGCTGGCGTAGGCTCCGCCGTG 3622 37 100.0 34 ..................................... TTTGCGGTCGATGCGCCCGACGGCGATCACGGCC 3551 37 100.0 36 ..................................... GGCCGCATCCAACAGCGACCACAAACCAGCCCCGGC 3478 37 100.0 35 ..................................... AATGAATGTGCATTGCAATAAGCATTGCATCTCTC 3406 37 100.0 34 ..................................... TGGGGGTGGGGGTGGTGGTTCATTCTGGGGGGCC 3335 37 100.0 34 ..................................... TTGTTGCGTCTGGGTGGATCGTCTTCGGTAGCTG 3264 37 100.0 34 ..................................... GGAATTTTCCACAGTGCCCACGGGTGCCCGCTTT 3193 37 100.0 35 ..................................... GTTTATCTTGTCCGGCCCCAAAACCACCAATAACT 3121 37 100.0 35 ..................................... AACCCCCCAGTGTTCTGCACCCGGACGGGCTTGCG 3049 37 100.0 34 ..................................... TGGCCCAGGAGATGAGGATGAGGAAATCCCCTCA 2978 37 100.0 35 ..................................... GTCCCCAGTCGGATTCCCTACAAGCGCTACAAGGG 2906 37 100.0 34 ..................................... AAAAACATCGCGTGGTACTTCGTAGGGGCCAGGG 2835 37 100.0 34 ..................................... GGTATCGCCGCTCTGGGTAAATTGGCCATCAAAG 2764 37 100.0 34 ..................................... CTTTGGCCAAGGGTGCGATGAGGTTGCGAATTTC 2693 37 100.0 35 ..................................... CAGGCATCATACACTTATCCGAGTCGCACCCCGCA 2621 37 100.0 34 ..................................... TGGCTTCCTGGTGAGGGTTCGACGGAAAAACCAA 2550 37 100.0 36 ..................................... CTCTCTCTCCGATACTGCGACAGGAGGGGGTAGGGG 2477 37 100.0 36 ..................................... GATTTATGGGCCGCAAGGGAGCGGCAAAAGCACTCT 2404 37 100.0 34 ..................................... AATATGCCCTTCTTCCAGGATTTGACGGGCCGTT 2333 37 100.0 34 ..................................... GGGCACATGATCAAACCCACTGGCCAGCACGGGC 2262 37 100.0 35 ..................................... ACGAAGGACGCCAAGGTGCCTAAAGCCATCCTGGA 2190 37 100.0 35 ..................................... TTGAGGTGCGCTTCGACCGCAAGATGAAAATGGGC 2118 37 100.0 35 ..................................... GAAAGAACGGCTGAATGGCTGCTCTTCAAGGTGGG 2046 37 100.0 36 ..................................... AATGAGTGTGCATTGCAATAAGCATTGCATCTCTCC 1973 37 100.0 34 ..................................... ATCCCGGAGACAAAAAGCGTTCTGACTTCGTTCG 1902 37 100.0 35 ..................................... CCCTCGCTCGATACTGCGACAGGAGGGGGAGTGGG 1830 37 100.0 35 ..................................... GTCGCAACGTGGTTGTCGCTGCTATTGGGATAATC 1758 37 100.0 34 ..................................... AGATTCCCAGCCTGCCCTAGAAATTTCCTGCGAC 1687 37 100.0 35 ..................................... GTAGAGAGTTCTGATCACGGTGATCCGGTCTTCAC 1615 37 100.0 36 ..................................... TAGATAGAGCTGGGCCAACTGCTGAGAGGGGAACTT 1542 37 100.0 36 ..................................... AGCGGCGTCCCGAATCCGGCTCAGGGTGTCCAGGAC 1469 37 100.0 36 ..................................... AAATTCCCAACTTGGGCTAGAAATTTCCTTTGACTG 1396 37 100.0 35 ..................................... CAAATCACGCCTGAGCCATTTTTAACGCGACTACA 1324 37 100.0 36 ..................................... AGACAAGATGGTGAGGATTTACGATAAGTCTGTAGA 1251 37 100.0 35 ..................................... TGGTGCGGTCGATGGATGCCCTAGACCGTCAGTGG 1179 37 100.0 35 ..................................... AGTGGGCTTCGATGTTGGCGGTGATTGCGCAAGCG 1107 37 100.0 36 ..................................... ACTTTGTCTACACCAGTTCTAGCCCCTCCATCCACC 1034 37 100.0 36 ..................................... TTGAGCTTTCTTTTGGGCATGGCTTGACGGGTATCC 961 37 100.0 35 ..................................... CTACAGAAAAACCAAAATTGATAGACCCTGGGACA 889 37 100.0 34 ..................................... GGGCGCATCGACCGCAAAAACCGAGCCAGCCCAC 818 37 100.0 35 ..................................... GGGTCTATCTGTGTGGATAGCAAGCGCTTTCAATA 746 37 100.0 35 ..................................... CCCAGTAATGGCCTGGATTACGTCAAAGCGGTATG 674 37 100.0 35 ..................................... GGGTTGTTATTTTGTAAAACACCTGCACACCAGGT 602 37 100.0 36 ..................................... CTACTCACTCGGAAGCAGAACGGGTACTCAAGCTGT 529 37 100.0 35 ..................................... TACTACATCCCCTTGGGGTCTGGGTTGGGGGGCGC 457 37 100.0 34 ..................................... TGTCGTCCCTGCGTTGGAGGTGAAGTAATGCAGC 386 37 100.0 35 ..................................... ACGGCATAAACCTATCTCAGAAGGTCGCCTCTCAA 314 37 100.0 34 ..................................... TAGAGACTCGTTGGATCGCCCGTCTAGACTTGGT 243 37 100.0 35 ..................................... TGACTGCATTTCGTCCAGACTGGCCCGCCGAAATT 171 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 116 37 100.0 35 GTTCCAACCAACTCCAAGCCCTCTCAGGGATTGAAAC # Left flank : CTGAAGATAAACGTCGCACAAAAATCCATAAAATCCTTTCTTCCTATGGCCAATGGATGCAGTTTAGTGTGTTTGAATGCAGCCTAACGGCGACACAATATACTAAGCTGCGAAATCGCCTGAATAAGCTGATTAAGCCTGAGACCGATAGCATTCGGTTTTATTTTCTCTGTGAGTGCTGTCAGCAAAAGGTGGAGCGCATTGGTGGGGAGGAGGTGCGGGATGAGACGGTGTTTTTTGCCTGATGGGCTGCCGCGAGGGGGTGGGTGTTTGATCGGGGAGGTCTCAACGGTTCTCCAAAACGCTCTCTATCAGCCGAGTTGGACGATTTCTATCCTTTTTCAGATCCGCGCAATGGCTCAATCCCTTTATCGACAAGCTTTTGGAGCGCTATGCCTGTGGGGCGGTTCTCCACTTTTGGCGGTGGTAATGCTACGATGGAGGGGTTCGCGCAACGGAACCTTGAAAGCTAAATATCATAAGGCTTTCAGAGGCCCGCC # Right flank : CTCTCCATATGATTAACCGTGTTTTGAAGAGATATTGTCAAATCTGGTGTATGGCTAGGATCTAGGCGGCGTCCTGCATCTGGGTCACATCGGGGTTGTCATCCATCCGGTATCCATCCTTGAACGGAATGCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAACCAACTCCAAGCCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : NA // Array 1 14535-26889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000040.1 Phormidium sp. FACHB-1136 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 14535 37 100.0 37 ..................................... GCTTCTTTCAAAGTTTGCCTGTCAACATCGGCACGGC 14609 37 100.0 35 ..................................... GACTTGGCCACGGTATTCCAGATAATCAGCGTTCA 14681 37 100.0 36 ..................................... TTGATAAGGCTTACTCTCCCATCGGAGACAGCCTCG 14754 37 100.0 36 ..................................... AGGCCGGGGATTCAGTCAACATGATTCCTGTCCTGA 14827 37 100.0 36 ..................................... GGAAAACCTCAGCGAGGAACCGCACATTGTCTACAA 14900 37 100.0 36 ..................................... AGCGACTCTTGAGGACAGGCACTAGGCGGGTGCCCT 14973 37 100.0 36 ..................................... AGGTCGTCCCTCGTTAGCCCCCGGTTTTCTCTTGTG 15046 37 100.0 36 ..................................... GTGGATATCGCGGGACATAGGTGGCCTACGAAAAAA 15119 37 100.0 38 ..................................... CTGAGATTAATGAGAACATCATCAATCAGCACCTCAAT 15194 37 100.0 36 ..................................... AGATGAGGTACCGGATTGACCCACCACCCGCGCATT 15267 37 100.0 38 ..................................... GTAACGTAGATTCTAGCTCCCTCCGTCGCCATACCATA 15342 37 100.0 34 ..................................... TGTAAAAGAGAGATGGTCTCTGGCTGAACCCACT 15413 37 100.0 38 ..................................... ACTATAAAACACCGAAGTGCCTTTCTGGTCACGGACCA 15488 37 100.0 41 ..................................... ACCTTTTCTCGCTGGAAGTAAGTCCAGATGTCCTCATCAAG 15566 37 100.0 39 ..................................... AGAGATCGCCCTAGCCCTGACGGATGCTGTTGACCCCTG 15642 37 100.0 36 ..................................... CATAAAGACCTTCACAGGTCTAATATCTGGGTCACA 15715 37 100.0 38 ..................................... TCAATGGACAGCTGCTCCTCGCTAGCAGCATCTTCATT 15790 37 100.0 39 ..................................... TGTTCTCTCCTTTTTATATAATTCAATCCTAGTTAATCT 15866 37 100.0 40 ..................................... CTTCTCAGCCATCAGCTCACAGTACTCCTGCCCATACCAG 15943 37 100.0 36 ..................................... TTAGGAACCCCATCCCAACTGCAATGTAGGTTTTGG 16016 37 100.0 39 ..................................... TCGGATATTGGTCTCTTCCCCATTGGAGCCCTTCACAGT 16092 37 100.0 37 ..................................... TATGCGGTATCAGCCGCAAGTGGCACGACGCTCACCT 16166 37 100.0 38 ..................................... ACCAAGTTGGCCCCAATATCTCGCCCCTTGATTTTGGC 16241 37 100.0 37 ..................................... AGTAGTTATCTGGCCCTATTAGGTATCTATATTGTGT 16315 37 100.0 41 ..................................... AGAGATACTCCTGCCAATCTTGCCAGGACTCCTTTTGGATG 16393 37 100.0 40 ..................................... GCACAGCCCATGGATGAAAATGGCGAACTCATCACTGGTC 16470 37 100.0 41 ..................................... CAATCTCCATCTGTTCTTGGAAGGAGACCTCAAACCCTTCT 16548 37 100.0 38 ..................................... TCTGTTGAGCAAGCTCTTGAACTGGAGAACTCTACTAT 16623 37 100.0 36 ..................................... CCTAATATAGAACTACCTAGGGAACACAATGTAAGA 16696 37 100.0 40 ..................................... AGAAGGATGTTGGATAGACATAGTGGTCTCCTACCCTAGA 16773 37 100.0 41 ..................................... CGTAGGGACGAGAGATATTGCCGATGTGGTTTGGCAACAGT 16851 37 100.0 39 ..................................... GGGAAAGGACTTAACCAAACCAGCGGCAATGTCGTCCGC 16927 37 100.0 36 ..................................... ACGGAACGAGCCAGCGGGGGGATAAACGGTGACGCA 17000 37 100.0 40 ..................................... TGAAAAACCTATTAGTGTGAATTGATTATAGTGACCTTTT 17077 37 100.0 36 ..................................... TTTAACCCAATACCTATATAGAGAATAGGGCTGAGC 17150 37 100.0 38 ..................................... GCTGAGTTTTTCACTCTTCTGACGAACGTTGAAGTAGA 17225 37 100.0 39 ..................................... ATTTAGAAGCTGGTAAAGATATCACCAGCTTTCCCATTT 17301 37 100.0 43 ..................................... TACAGTAGTCGGGCACATACCTCCATAGATAGGTTAGTAAAGA 17381 37 100.0 36 ..................................... CATTGAGGTGGTGCGCTGGGCCAATAAAAAACCCCG 17454 37 100.0 39 ..................................... GCCGCTTCGTGGAGGTGCCCTATCGCCAGTAGCTTATGC 17530 37 100.0 40 ..................................... CACCCCAGCCGATCAAGTCCCTCGACATCTCATCCTCAAG 17607 37 100.0 33 ..................................... CGAATGATGCACCACACACCCCCTAGCAGGAAA 17677 37 100.0 37 ..................................... ATTGAGATCCCCCGGTCAGACCAATCGACCGGACAAA 17751 37 100.0 39 ..................................... TGGGCCTCTCGCCAAATACGGATTCTACGCGATCAGCTT 17827 37 100.0 41 ..................................... CAAAACCCTAGCCATAAGCCCAGGATGAACACGGCTAGGGT 17905 37 100.0 42 ..................................... CAACCTTAGAAGCGCTGGCAGCAGCTAGGGCGCGGATACTGC 17984 37 100.0 35 ..................................... GCCGTTACTTGGGTGCGTGGCTGGGGGGCTGCGGT 18056 37 100.0 36 ..................................... GTTTGAAAATGCCTGTGGAGGGGAAGCGGCGGGGGC 18129 37 100.0 40 ..................................... GTTTCGCGAGGGCTTGCCCTTTGCCTATCAACAACTCCTA 18206 37 100.0 40 ..................................... GGCTTTTTCATTGCTTGGCATCGGGACGGCTAAGCGACCA 18283 37 100.0 41 ..................................... CGAGTAGATGCTAGGCAGGCGGCACCCGAACGCCCCCTCAC 18361 37 100.0 40 ..................................... GTGAGCAATCAACGGCAAGTCAGCAATTTTCCAATGAGCG 18438 37 100.0 35 ..................................... TGCGAACTGTCCCCCAGGGCCACGCTTTACCATGC 18510 37 100.0 36 ..................................... AATCGCTTCGATGAAGGGCCAATACCGCGCATTGAT 18583 37 100.0 36 ..................................... CATACCTGCGCGATGAAATTCAAGGGCTATCCCCTC 18656 37 100.0 40 ..................................... CTTCGGTCGCTGGCACGATGGGTCTAAGCCCGACTCGGAG 18733 37 100.0 39 ..................................... CTTCCTCAATTTTCTTGTTTCTTTTCTTTTCATCCTTTG 18809 37 100.0 38 ..................................... TCAGTTCAGCCGCGAGGGCCAATACGAGAATCAGGAGG 18884 37 100.0 37 ..................................... CTTGCATCGGAACACGTAGCAAAAATTCTGGAGGCGA 18958 37 100.0 36 ..................................... CTCGACAGCCGATCATCCACCAGGCGCACACTGCGA 19031 37 100.0 39 ..................................... ATTAACTTGATCCTCCGTGGTGGCCCAATCGGTTAGAGC 19107 37 100.0 37 ..................................... ACCGTGGAGGGGGCCATTGCAGAAGGCATTGAGTTGA 19181 37 100.0 37 ..................................... CAGGAGTTCATCACGAAGGTCTCGCTCTGCATCCCGC 19255 37 100.0 38 ..................................... AATTGCCTGAAGTTCCTGCTCAGTCTTCCCATGCAACC 19330 37 100.0 42 ..................................... CATTAGGCTTTTTGGATGAAGCGCTCACTAAATGCCGTGCCG 19409 37 100.0 41 ..................................... ACCTACATCATTTTCTTGGAGCCAGCCGACGATGCTCAGCC 19487 37 100.0 37 ..................................... CTCCTGCTGTTCCGCAGTCCAAGTTCGCTTGTCCTTG 19561 37 100.0 41 ..................................... GACGGGCATAGGTGATCGCGGAGCCGTTACGCTGCCCATCG 19639 37 100.0 36 ..................................... TACATTAGCGGGGGCTACGAGTGCGATGCCCTTGAT 19712 37 100.0 40 ..................................... CGACCAGCCTACAGCCCAGCTCCTCGATCAGCTCCTCCAG 19789 37 100.0 40 ..................................... GAATGCCCTCTACGGCATTGAAGATGTCCTTCATGGCAAT 19866 37 100.0 39 ..................................... CAAAATGGCCTGGGCCTCCCCCACCACATCTGTCTCATC 19942 37 100.0 36 ..................................... GGGCCAGCAGCTTTTGGATCTTCTTAACAATCGAGT 20015 37 100.0 35 ..................................... AAAGTTTTATCTGAACCTGTTACATCAATAGCCAT 20087 37 100.0 38 ..................................... GAATTGCAGGCGACAACAGGGCCAGGGTGGCGCTTGAT 20162 37 100.0 37 ..................................... GGGGCTTGAGAGCGGGGCAACTTAGCGACGATTGGAG 20236 37 100.0 40 ..................................... ACCTTTGAAGGCTATGGTACTTCTGAAAAAGAAGCTCTTC 20313 37 100.0 36 ..................................... TCAAAATCGAAATGTTTCTGTTCCACCACCACCATG 20386 37 100.0 37 ..................................... TTCGTTTGCGTCAAACCTAAAGCAGCTACGGCCCTCA 20460 37 100.0 35 ..................................... CTAAAAAAGATCAAGTATAGGAAATACCATGTTTT 20532 37 100.0 37 ..................................... CATCTACTCCTAGGAGGGAGCCGTGATTCAAGTCAGC 20606 37 100.0 39 ..................................... CACAGTCATGTGCGATAGCCTGCAACTTCAAATACCAAA 20682 37 100.0 36 ..................................... CTGCTGGGATCGGGCCCAGGTCAGAAGGGGCCAGAA 20755 37 100.0 37 ..................................... ACCGTGGAGGGGGCCATTGCAGAAGGCATTGAGTTGA 20829 37 100.0 36 ..................................... AATGTCAATTACACTATTAACCCCCTCCATAAACTC 20902 37 100.0 39 ..................................... TCAACAATATACCCCAACCTCCCTTAAACTTGTCCTTAA 20978 37 100.0 40 ..................................... GATCCTCAATTTCTTCTTCTTCCACAAATTGCTTGATCCC 21055 37 100.0 39 ..................................... TGACACAGACGGGGGTTCTTCCACCTCAATCGAAAATCC 21131 37 100.0 41 ..................................... GGTGGTGACGGTTTGGCGACCGCCTACGGGAATCATCACGG 21209 37 100.0 37 ..................................... AGTTGAACCATACATCCCCCTTCCACTATAGTCTTGA 21283 37 100.0 36 ..................................... AAAGTTTTTTCAATCTTAGTATGATTTTGGCCCCAA 21356 37 100.0 36 ..................................... GTACGCTCAAAATTCCCCTCGACCAAGCGCAATTTG 21429 37 100.0 39 ..................................... AAATGGACGGGCGACCCGACCTACGCCCAGGCGTTGGAA 21505 37 100.0 49 ..................................... TCCCAGAGTGCAGCGCCCCTGCAAATAGCCTGAATCTAAGACGGCTTGA 21591 37 100.0 37 ..................................... CCTGTGGCAAGGGCTGGATTCCCCGATCTAAGAAATG 21665 37 100.0 41 ..................................... TCAACTTCCAACGACACCGAAGCCGTGGAAGTGGTGATAGC 21743 37 100.0 38 ..................................... CGGTCTGGCCATCGCCCGTAAAGCTGATGCGCTTTGGT 21818 37 100.0 41 ..................................... AACTTAAAGTGGTGACAGTCACTAATATGGGCTTTGTTCAC 21896 37 100.0 35 ..................................... ATAAATTAAATTAGTATGTTCAACAAAAAGGCAAG 21968 37 100.0 34 ..................................... CTTGATCTTGTTCGAGTAGGGGATGTGGTGCGTC 22039 37 100.0 35 ..................................... CAATGATTCGGGCGACATATTTGGGACTGAATATA 22111 37 100.0 36 ..................................... AAGGTGCCTCGTTAATGAAACGAATGCTGGTGTCTA 22184 37 100.0 40 ..................................... GCCTTGGACGCGGTCCACTGGTCATCGGTCATCAGGCATG 22261 37 100.0 39 ..................................... ACTTAACTCGATATTCAGAGAAAAATGATAATGAATATT 22337 37 100.0 40 ..................................... GGGAAAACCCAGTTTGTTCAGGGAAATGAGGCGGTTGGGG 22414 37 100.0 39 ..................................... GACAACGGTGTGTATCTGGGCAGTGAACGGCTACTTGGC 22490 37 100.0 42 ..................................... GCTAGTTGGATTGTACCATCCTTGTGCCCTAAAGGGCAGGGC 22569 37 100.0 39 ..................................... GAGGGGGTATCCCGACTCGTCCTGGCTCTCGGCCACATG 22645 37 100.0 40 ..................................... GAGAAGGGGTTTAGCGGGGCTTGAGAACGATGGGGTTAGT 22722 37 100.0 36 ..................................... TGGCCGTCTGAACTCATCGACACGATGCACCATTGG 22795 37 100.0 36 ..................................... AATTCTTGTTCGTTCAAGAAGCTAAAAGAAGCAACG 22868 37 100.0 37 ..................................... TTTTTATTATGCTTCTATACTATATACGCTATAATGA 22942 37 100.0 38 ..................................... TGATCCTTGCGGCCTGGATAGTTGCCACCTTTTCCTTG 23017 37 100.0 36 ..................................... GTTGATCGAAGTCGAGCATGTCGTAGATTTTTCGGA 23090 37 100.0 36 ..................................... AGTATCTGACATGAGCGTCCACTACCTCCAGTTCAT 23163 37 100.0 37 ..................................... GTTTGAAAAATTTATTTTCAACAACCTCGTACCCATC 23237 37 100.0 37 ..................................... ATTCATGGGCGAACTTTTCAGTACCCACGAACTTAGA 23311 37 100.0 35 ..................................... GCAACAGTACGGGAAAACTGCCAGTTCTCAATGGG 23383 37 100.0 40 ..................................... TGGTCGTGATAGTGCCTGGGTTGTGCAGGTGAATTGGCGG 23460 37 100.0 36 ..................................... CCCATGTTTTTTGTACTGGTCAACGTACTGAATTTG 23533 37 100.0 40 ..................................... CCCCAGCGATGGCCCCGCCCCGTGGCGGGAGGAACCCTGC 23610 37 100.0 41 ..................................... AAAGGTTAATTCCTTTTCTTCTTCCTCGGTAAAGCCTACTT 23688 37 100.0 38 ..................................... GTGAAAATGCCAACCGCAGGGCCGGACACCACATCACC 23763 37 100.0 40 ..................................... CGTCATCCACAACGACGGGGACGGCCCCGCTCACCACAGG 23840 37 100.0 38 ..................................... TTAAATCGGCGGCGGGTCTTTGGCGTAATCTTAAACAT 23915 37 100.0 36 ..................................... AGGAAAATAGTGAAATTGTCAGCATTGTCAATTTTG 23988 37 100.0 35 ..................................... TGTAGTTGAGAATCTCATAGGCAGATTCTCGCGTG 24060 37 100.0 36 ..................................... CAGAGGCGTTGTCTATAGGGATGGTGTTCAGCGGGT 24133 37 100.0 35 ..................................... CATCCCGCAAGCCAGGTAGTTGCCCCCATGGGTTT 24205 37 100.0 35 ..................................... TTCCCGTGCGATTTAGTACAGCTTGAATTGTTGGC 24277 37 100.0 40 ..................................... TTGACTTGGGGGCACTGCGGATGGAACCGGGACACGATTG 24354 37 100.0 36 ..................................... TCAGGGTTGAGGAGCATATCAAGCTCGTCTTCATCT 24427 37 100.0 41 ..................................... CTTCCTCCTGCGACACTCCAAAGTGCATCTGGCCGTAGTCG 24505 37 100.0 39 ..................................... ATCGTATCAACGGTGCCGCTGGCACTCGAATACTTCCAC 24581 37 100.0 44 ..................................... ACAGGTATACATTGTTGACCTCAAAAACACTCACAAATAACAGT 24662 37 100.0 37 ..................................... TCAAAGTCTGACCAGGGTAGAGCCAAGGTCACACCGA 24736 37 100.0 36 ..................................... AGGTATTCACCACGCCAATCCCAGGCGTCAACAAGG 24809 37 100.0 38 ..................................... TCTTGAACGAATTCACACCAAACACTCCACACCCACCC 24884 37 100.0 40 ..................................... TTCAACTCTTTAAGCTGTTCCCATTTCTCGTATAGGGCAG 24961 37 100.0 40 ..................................... ACCTCTGAGTAAAAAAGTTCGAAAGAGAAAACCTTGGAGT 25038 37 100.0 35 ..................................... GAGTCTACCTTTGCTATGGGATTGTTTTGAAATCT 25110 37 100.0 37 ..................................... TGCAATCGCAACTCGCCGACGCCGACCTTGGCCGGGG 25184 37 94.6 42 ....G.......................A........ GCTGCTGAGTTGTAATCGTCGAGAGCGCTACCGCAGCAAAAA 25263 37 100.0 40 ..................................... GAACGTCACGACTGGTATTGTCAGGCAAGTATAGTTCCTG 25340 37 100.0 39 ..................................... AGTCTCTGCGCCATCGGGGAAAAAATCCACGATTTCAGC 25416 37 100.0 40 ..................................... TTCGTCCACGTTGAAAGTCCATAACTTCTTTCCTTCCTTT 25493 37 100.0 37 ..................................... GTACAGATGAAGATGTAAGGCAGACCAGCGTGGTTAC 25567 37 100.0 37 ..................................... CGCAATGGCAAAGCGCACGTTGTCGCTGCGATCAAAC 25641 37 97.3 38 ......................T.............. CCGAGATGATGGGGAGTTATTCCTTGGCGCGGCTGTCG 25716 37 97.3 37 ......................T.............. GCGTAGGCGGTTGATCACGTCGCTGGTTGAAACATAG 25790 37 97.3 39 ......................T.............. GGCATTGAGGTGATCTACCCCAGTGCCGACGGCATCACC 25866 37 97.3 45 ......................T.............. GCCAGGATACTGAGTTGGCTATCCCCCTGGCTACGGTCAAGGCGT 25948 37 97.3 35 ......................T.............. CTGTCGCTGGTGATTTCATAGCTGTAGTTCATCGT 26020 37 97.3 39 ......................T.............. CATGTGATTCGGCTTAGCCCCGGTTCTCCCTGCCGGGGC 26096 37 97.3 38 ......................T.............. CCCATTCTCTTAGCGCTTCCTTTGGGACGGTTGTCACG 26171 37 97.3 40 ......................T.............. CCGGACGCCTCCACAGCAACGGTAAGACCTCCAGCGGGGC 26248 37 97.3 40 ......................T.............. TTGCTGGTCAGGTATTCAAGGGTGTGTTTCATGGTTGCCT 26325 37 97.3 42 ......................T.............. TGCATGACCTTGTAGCGCTGGGGGTTGCGTAGGGGTTTGGCC 26404 37 97.3 40 ......................T.............. GGAAGGACGGTGGCCCCCCGGTAGCGCTTGTAGGGAATCT 26481 37 97.3 37 ......................T.............. TGGGCTAGGGCTAGATGGCAATGGAAGCGACTGGAAA 26555 37 97.3 40 ......................T.............. CCAAATGGCGGAAGGAGAGAAGTCGCCCAAGATTGAGGAA 26632 37 97.3 38 ......................T.............. GCCACGGCGGACAGCAACTTTAGTTTTCATGGTCAATA 26707 37 97.3 36 ......................T.............. ACGGCATCCGATAGGGTTTCAGCGAACTTCACAGGG 26780 37 100.0 36 ..................................... TTCTTGGCCAGGGCATCTACGACCCCCTTAAGCCAG 26853 37 97.3 0 ....G................................ | ========== ====== ====== ====== ===================================== ================================================= ================== 165 37 99.7 38 GTCAAACACCCTCAATTCCCCGCAAGGGGACGGAAAC # Left flank : AAAAGGAACTGCGCCATTTGCTAGAAAAGCGCTGGCTGAAGGTGCTGAACCTGCGGGAGGATAATCTGCGGATCTATCCCCTGGATGCCACGGCGAAAAAACGAACCCTGGTGTTTGGTGGCTCCCCACCCTACGAACCACCGGACTATGTGATTCTGTAACAATTTCGTTATCATTTGGCGGCGGGTTGGCCCGGTGTTGATGGCCAAAAGGGCCACCAGAAGCCGGATTTTTTGGCATTGAGAAATGTAACGAAGTTTCGAGTTTTGTCGCGCCTAGCTGGGGAGCGTTAATCGTCGTAAACAAAACTTCGCTCAACGAAACACGATCTGTTTGCCAAAATTGGCCCCACTTTGTATCTTTTTCGTTGTAATTTGGCTATAATGACCAAGAAGGCTTGGGTCGATTATGAATGTTTCATCTTGTAAACAACGTTCTCCGTACCCCCGCTTTTTCGGTACCTTGAAAACTACATATTTCAATAGTTTCCAAAGCCGAGG # Right flank : CCTAGGATAAAGTTTTCTCGTACTGACTGTCGCCTCTGCCCACACCGAGACTTGTGTACAAAAGGCAAGTCGGAGCCGAGGTCGCTCACATTGCGGCCTCAAGCCGCACATGAGGCTATCCAAGCCGTCCGGCAAGCACAAGTGACAGAGGAATGGAAATCTCGATACAACGTACGCGCAGGGATTGAAGGTACACTCTCGCAAGGCATCCGTGTCTTCGGAATGAGACGAACGCGCTATATCGGGCTGGCTAAGACACACCTACAGCATTTGCTTACAGCCGCCGCAATGAACGTCGTGCGGCTAGCGAATTGGCTGGCAGGGGTTCCCCGTGCCAAGACACGAACTTCTCGCTTTGCAGCGCTCAACCCGGCTACTTAGGCTCGTTTCGACTTCGCCAACAGTATCCATTACTACTCAAACCCCAATTTGGACATTTCCAAGCTCTTAACTCATATGGATTTGGATATGTCTGTTTTCGTCTATACCAAATTAGATGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAACACCCTCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 5028-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000179.1 Phormidium sp. FACHB-1136 contig179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================= ================== 5027 36 100.0 38 .................................... GATGCGCCCTATTGAAAAATGGAATATTCAGGAATTTG 4953 36 100.0 35 .................................... GCAATAGGAAACCCTCACACCATGAACGAAACGCG 4882 36 100.0 37 .................................... ATAGAGGCCGTGCTTAGTAAGCTAGAAAGCCGTTAGG 4809 36 100.0 39 .................................... ACCGCTAGTACAAACTGACCATCGTGCAGCATTGAACCG 4734 36 100.0 37 .................................... AAGGCAAGGGTAGGCATAGACTAGGGATGTGTGTTCG 4661 36 100.0 36 .................................... AATGATAGGCACCCGCTATCGGGTCATCCGGGCGGG 4589 36 100.0 37 .................................... AAGACTGGTGATTTGTATCTGACAATTCCTAAAATTG 4516 36 100.0 37 .................................... ATCTAGCGTCGCGTAGGTATCGTCCTCCCCGCTCCGG 4443 36 100.0 36 .................................... ACTGGTCGTGGCCCTCGACGGCTGGCAAGAATCGGG 4371 36 100.0 36 .................................... ATTTAGCTTTCTTTTGGGCATGGCTTGACGGGTATG 4299 36 100.0 57 .................................... AAGGCGGCGTGGTGTTCCACCTCTGTGCAAACTTGGGTCGACGCTGCCTCTGGTTCG 4206 36 100.0 37 .................................... AAGGCGGCGTGGTGTTCCACCTGGCGGCGGTTCCCGG 4133 36 100.0 47 .................................... AAGGATGTACATTGACGCTAACAGGATTGAACTCGAACTAAAACGCG 4050 36 100.0 37 .................................... AAGGATGTACCGAGAAATCAGGGTGTTCAGCCGGGGG 3977 36 100.0 36 .................................... AGTTGGCCTTTGAGGCCCTCGCACAGGTGGCCTTTG 3905 36 100.0 38 .................................... ACATGGCCCACCAGCGACGAGGGGGATACACGCCCTTG 3831 36 100.0 37 .................................... ACTCTCGCTCCGATAGGTGACGTGTAGTTTCTAGGGG 3758 36 100.0 37 .................................... ACTATCCGTTGGGGGGCTGGTGCCCTAAATGAAGAGG 3685 36 100.0 38 .................................... ACCCTCAGTCCGATACTGCGACAGGAGGGGGAGTGGGG 3611 36 100.0 36 .................................... AGTCTGTGCCAGACTGTCACCAAATCCATTAATTCG 3539 36 100.0 37 .................................... ATCACTATCAACTCAAACATGCATTGGAGCTTTGCAG 3466 36 100.0 37 .................................... ACTCTTATCTCTGTTGAGCCTGCCAATCCCGAATTAG 3393 36 100.0 36 .................................... AAAAACCTGGCGGGGGCTGTGGGCTGAGCGGGGCTG 3321 36 100.0 38 .................................... AATGAAAATTCCTGTCTACGTCGGTTTTGTAATTTGGG 3247 36 100.0 37 .................................... AATGCCAAAGTTGCTGGGCCATCCAATGTAAGCCCCG 3174 36 100.0 35 .................................... AGGCGCTCCTAAGCCTAAGCCTGTTGTCTCCCTCG 3103 36 100.0 36 .................................... AATGGTCGGACAGCGGCCCGACTTCATTATGGAAGG 3031 36 100.0 37 .................................... ATGCCATTGTTCTGTTAATCAAGTTGTACAAATTGAG 2958 36 100.0 36 .................................... AGAGGAAATTCGCCATGACAACAGCTTTGATTCCAG 2886 36 100.0 38 .................................... AAGGAGACAACACCAATTCAGTTTGATTCATGATGCCG 2812 36 100.0 36 .................................... ACTGTCCGGTGGGGTGCTGGTGCCCTGAGTGAAGAG 2740 36 100.0 37 .................................... ATGATTCATGATGCCATCCTATTCACAATACGGAGGG 2667 36 100.0 36 .................................... AGCTTTTGGTGCGGCCCCCCCCATCGCCCGTAGGGG 2595 36 100.0 37 .................................... ATAATGGGTTGAAATATGCCTTTCCCCTCGATAAACG 2522 36 100.0 39 .................................... ACATTGAGGATGGCCAGGGCGCTTCTCTGGGGGTTGCCG 2447 36 100.0 36 .................................... CCTATGCCTATGACAACCCCAGTTCATGGCTGTACC 2375 36 100.0 36 .................................... CTAACGGGTTTAAGCAGGAATCTGAAAACCCTTGGA 2303 36 100.0 36 .................................... CAGCCTGGATGTTGGCAACATCAACACCAGCGAGGA 2231 36 100.0 35 .................................... CAGTGAAGCTTCAAGCGCTAAATCAAGGGCTGAAC 2160 36 100.0 36 .................................... CGATCCACTCGTCGCCATCCCAGAAATGAGTGGGGT 2088 36 100.0 36 .................................... CTCTAATTTGCGCTAAATACACTGAAGCCCGGTATG 2016 36 100.0 36 .................................... CGCGACCGCTTGCCCATCGGCCACCAGCAGCCGGAG 1944 36 100.0 35 .................................... CAAAACACGATTAATCATATGGAGTGAAGGGCCAA 1873 36 100.0 42 .................................... CAGCCAGTGATACCCCATCATTTGGGAATACTTGAGAAGCTC 1795 36 100.0 36 .................................... CCTTAATCGCAGTAACGTAGTCAACGATCTGAAGCT 1723 36 100.0 35 .................................... CAGAGGATCGGTTATCGGCCACGGCGTAGGATTTC 1652 36 100.0 34 .................................... CGTTCCCAGCCGGATTCCCTACAAGCGCTACAAG 1582 36 100.0 37 .................................... CTTACCGGACTCTTTATCAGTGAAACTGTAGCGGCTA 1509 36 100.0 37 .................................... CATTGCGCGTCCGGGTCGGGGTCGGGTGTCGTGGGTG 1436 36 100.0 36 .................................... CTGGACGTGATTACGCTCACGGGGGATGAGGATTGC 1364 36 100.0 36 .................................... CGATTGAAGCCTTCCCGGCTTATTGGTGTGGTGCGC 1292 36 100.0 37 .................................... CCCTTGAACACCTTGAGGCAGAAGGCGGCAGGCTTCA 1219 36 100.0 35 .................................... CAACAGCCCCTACCTCACGCCTGAAATGCTCGACA 1148 36 100.0 37 .................................... CCGAGCCGTACCACGGTTGGAGGTGCCACGGTTCGAG 1075 36 100.0 37 .................................... CATTGGCTTCAGTGGGTGCTGTTTGTGGCCATGGTGG 1002 36 100.0 36 .................................... CGGCACTCAATCACTCCCTCATGCGCAATGGTGCAA 930 36 100.0 35 .................................... CGAATGTGACACCTCCATTGGCCCCATAGCGCCCG 859 36 100.0 36 .................................... CCTAATGAAAAACACCCTGGAAGCCAATGTCAAATC 787 36 100.0 35 .................................... CATATTCCGCCTTAATGGTCAGTCGTCCATCGGGG 716 36 100.0 36 .................................... CAGGGGTGTATCAACAAGCGGCGATGTAATGAGCAA 644 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================= ================== 61 36 100.0 37 GTTCCAACCAACTCCAAGCCCTCTCAGGGATTGAAA # Left flank : CACAAATTGACGGCCACAGTCCCGGCACTTGTAATTTTGCTTCCCGCGATGGCTGGTGCCGTTCTTGGAGATATCGTGAGACCCACAGGTCGGACAGGTCATCTCGATGGCCATGCGTTTGTCTCCCTGATTATCGTGGTGGCGTAGCCTGATTTTCCTCTGTCCCGTGCATTAATGCACTACCAGGGATTGAAAGCTGATGCTGATTCGAGCTTTGCGGGGTGGGTAGTGA # Right flank : CTTCATGACTGATCCCTCACATACCGTTGGGCATCTCGAAAAATACTGAAGACACTGTCTCACAATGAGACTCACGCCGAAATCCAGACTCCTGAAATATTTGCTAATAGTCCAATATTTGATCATTAGTATTTGGATTCTTAAAGAGATAGTCGATAGACACAAAAAGATGAGATCATAGATAATATAAATCACTCATTTCTCATCAGGGCACCTCGAAAAATACTGAAGGCACTGTCTCACAATGAGACTCATGTCGAAATCTAGATTCCTGAAATATTTGCTAATAGCCCAATATTTGATCATTAGTATTTTGGGTAGTGCATTAATCTACGGGTCAGAGAAAAAAACAGCCAAAAACAGCAATCTACTGCCGTAAGGTCTCTAGGGTCGCCTGATTATTCTCTAGCCTGTACGAAATAGGACTACCGTATTTTGATTCTTAAAGAGATAGTCGATAGACACGAAAAGATGAGATCATAGACAGTATAAATTACTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAACCAACTCCAAGCCCTCTCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 1 15579-12139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRS010000096.1 Phormidium sp. FACHB-1136 contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 15578 36 100.0 41 .................................... TTAGTTCGCCGCCTTTTTCTTACTAATCAAAACTTGATGCT 15501 36 100.0 36 .................................... TGTAGTGACGAATCCCTTCAGGAGACTCTTCCACCA 15429 36 100.0 40 .................................... CATGGTAGATCGATGTATTTTGAGTAAAGGAATCCGGGTT 15353 36 100.0 45 .................................... ATGATACGATCAGTAATGGCTTGATCGTTGTCGAATTTGGCTTTG 15272 36 100.0 37 .................................... TGACGCCTCTTCCCGTGGGCATTCCGCCACCGGATGC 15199 36 100.0 45 .................................... AGCTTATTGCGAGGTAATTTGACCCTCTAATTCACTCAGAAGTGT 15118 36 94.4 42 .....G..........................G... AGTCGCAGTCTGAGGGTCATTGTCACGACCACCCTGGCTAGT 15040 36 100.0 41 .................................... ACTATCACTAACAAACGCCCGATAAAGGTTGCCTTCTTGTC 14963 36 97.2 48 ..........A......................... CCGCTCCCCTGGAGGCCATAGATCAGGATGCAGGGATAGGCTAGGCAC 14879 36 100.0 42 .................................... TTGATGTCTGCCGATTGGATGGCAAAAGTTTGTTGACGGGCA 14801 36 100.0 35 .................................... CAATCCCCCAGCTTCGGTTTTGGATTTCACCATTA 14730 36 100.0 44 .................................... ACAGGAGGATTTGCCAGAGCCTGAACACGCAGCAACCCATCATC 14650 36 100.0 48 .................................... TAGTTGTAGTTGGGGTGACGCTTCACCGCAGCCGCCATCAGGTTTGCC 14566 36 100.0 43 .................................... TGATAGTAGGTGTTCTCGTCAACTTTATGCATGTTGATGATCC 14487 36 100.0 38 .................................... TGCATACCTGGGATTTGCCGACGGTCTTCCACGAGAGT 14413 36 100.0 41 .................................... ATTACGAACCAAAACAGTTTGTTCACCAACAGTACGAGTAG 14336 36 97.2 41 ....................T............... TTGACGCAGCCCCAGATCGTTGTTTGAGCGCAGAAGTGACG 14259 36 100.0 38 .................................... TCCACCTTCACCAATACCAGTTCCACCAGTACCAGTTC 14185 36 100.0 36 .................................... GCTAGTCTGTGAAGACTGCGATTGCCCTTGCCCTTG 14113 36 100.0 44 .................................... TCTTCTTCACTCCGAAGACCCATATCGACTACACCAGGAACCTG 14033 36 97.2 42 .T.................................. TCACGATCTGCCCGGTAACGCTCTACAAACTGGGGTTGAAAC 13955 36 100.0 38 .................................... TTGTTTTGCTGCTCTCCTGTCAAGGTTGGTTGTTCAGT 13881 36 100.0 47 .................................... ACCAGAATTCGCCCTTCGTTCTGCGGCAGGGGTGCCACAGGGATTTC 13798 36 97.2 42 .............A...................... CAAGTATAGTTACCCACGGGAGGCGCAACCAACTGAACAGAC A [13794] 13719 36 97.2 43 ..............C..................... TTTACCTGTGCACCAACAATGTTTAGCACATTGAAGCCACCAC 13640 36 100.0 42 .................................... TCGTCAGGTGGAGTAAAGCCCTCGTCCTTAGTGTGCTTGATG 13562 36 97.2 36 ....................T............... TGGAGTCGGCTTTCACCTCCATGCCCTGCCTTAAAG 13490 36 100.0 44 .................................... TCTCAGTCGTGCATGAGAACGACATAGTAAACCTCCTCTAACTG 13410 36 97.2 41 ..........................C......... TTTTTGGACATCAGATCATCACCGCGATGATCCCATACAGA 13333 36 100.0 43 .................................... TCGGGAATCTGTAGCCGTTCCACCGCCACCCCTAGCCCGTAGC 13254 36 94.4 43 ....G......A........................ TCCGTAACCGATTGGTCACGTTGGTCGATAGCAACGCCATTGT 13175 36 97.2 45 ............A....................... TGAAGAAGGAACAGGTTAGCACCAGTTTGTACACAGCTATCAATG 13094 36 97.2 23 ........G........................... GGAGGAACCACCGTAGGAACCTC Deletion [13036] 13035 36 100.0 40 .................................... GTCTGCCGCCATAGGTCGATCCGGGCTTTTTTGTCGAAGC 12959 36 97.2 41 ......T............................. AATTCCCCTGAACAACGCCTCGTGGTGAACAACCTTGTCCA 12882 36 100.0 40 .................................... TTGACATTCTCAACGGAGTTGCCTTCAGGATGGAACACAT 12806 36 100.0 46 .................................... TACACAGGATGGTTCTGGTTGTCCAGACCACCTTGGGAAACGCCAT T [12802] 12723 36 100.0 44 .................................... CTGTGCAAAAGCACCGTCTCAAATGGTGCAGGCATAAAGTAGGC 12643 36 100.0 39 .................................... TGCCTGTTGAGGCGAGATGTTGTTTTCGTTTGCAAAATC 12568 36 94.4 45 ....G........A...................... TTCACTATGTCAGTTGCAACTTCAACCGGAATATTCAGCTCGTTG 12487 36 97.2 39 ...............................A.... TGTTGAACTTGCTGTTGTCCTAAAGAGTTGATCGTGACG 12412 36 100.0 41 .................................... TATACATGTGCTAAGATCGAGTCCTATTCGTCTTTTGTTGG 12335 36 100.0 42 .................................... TCGAAGTGGACTTCGCGAATGCCGGGGCAGAGAATATCTGCT 12257 36 97.2 47 ....G............................... ACATCGTACACGGCTTGTAGCTCTTTGAGTTGCTTTTGTGTGAAGCA 12174 36 91.7 0 T....T.A............................ | ========== ====== ====== ====== ==================================== ================================================ ================== 45 36 98.7 41 CCCTACCGAAGGGCTAATTTCGGAATAGTTGGAAAC # Left flank : CGATGGGCCTACAAGTTTTAACCCCTGTGCAGTTTTTGGATGTATTAGCATCAGGAGAGCAATAATGAGCCGTTTAACCTTGCGATTACCGGAAACCCTTCATCAACAACTTGCCCAGCTTGCCGAAGGGGAAGGGGTATCGCTGAATCAATACATTGTTTATGCCTTAACTCGCCAAGCGGCTTTAGTCCATGGCATTCAGGTTGTCCCACAGGCGGAGGTTGAACAGCAGCGACAGGCGCTCGAAGCTTTGATTAAGCAGCTAGGGTCAGCGTCATTGGCTGAAGTTGAGGCTGTTTTAGCCACACGAGAGAACACTGAACCAGAAGCCGATTTGAGTGCAGAGGTAGTCGCCCGTATCAAAAAGAAAATTCAGGCGAGTAGGAAGCCATGAAATGGATCGTTGTGGCCCTTGCTCACCCTCGCAGGTGGGCTATAATCCAGTTGTGGGAAATCGGGTATCCCAAACCCTTGCCCCACAAAGCCTCCAGCAGGCTACT # Right flank : TCAGATCCCAGGGTTCTCAAAGAACCCTGGGATCTCTAACGCCTCGGAATGATTAGATACTTCGCACTAAAACCCCAGTTTCTTCAGGAAGCCGGGGTTCTTTCTATCGCATAATTGTTGTTGTTCTATTGAATCTGATCCCTCACCCATGCTCTCACCGCTCGGCGTAGGGCCAGCCGTCCTTGGGTGCGGTGGGCTTCAATTAGGCTGGGCAATTCCTGTACCTTAAGCATTGGAAAAACCAGGCTTTGGGCCACCGATTGATAGGCTCCAGATTGCAAGCGGTAGACCGTCAGTTGGCCTTGGTCGTAGCACCAAATTTCGGGTATCCCTAGCCGCGCATAGATCGAAAACCGATGGATAGATTTGCTAGTGAGGTCAATTTCTAGGGCTAAATCTGGGGGTGGATCTTGGTCTAAATCTAAGGTAAGTTTGCCGCGCACCAGGGCTTCATTTTGCACATAAAAGCAATTATCGGGTTCAATACCAGCCTGTGCCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGAAGGGCTAATTTCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //