Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUPX01000001.1 Listeria monocytogenes strain MOD1_LS117 HT84_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7906-5357 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUPX01000002.1 Listeria monocytogenes strain MOD1_LS117 HT84_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7905 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7839 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7773 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7707 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7641 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7575 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7509 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7443 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7377 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7311 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7245 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7179 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7113 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7046 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6980 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6914 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6848 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6782 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6716 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6650 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6584 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6518 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6452 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6386 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6320 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6254 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6188 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6122 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6056 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5990 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5924 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5858 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5792 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5726 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5660 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5593 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5527 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5461 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5395 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5360,5363,5368] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //