Array 1 28367-19742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTOD010000009.1 Bifidobacterium bifidum strain VKPM Ac-1579 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 28366 33 100.0 35 ................................. TCGGCGGAGGGCTCGGCGGCCAGTAATTCCGCCAG 28298 33 100.0 34 ................................. GCCTGTCCGACATCCCCACAAGCGTTGACGGCTT 28231 33 100.0 34 ................................. TGGGAAAATACCGAGCGCGGCGTAGAGGCTGTAG 28164 33 100.0 34 ................................. CTCCGCGTTGAGCTCGTCCCCGGCGCGTACGAGA 28097 33 100.0 35 ................................. ACTTTGGACGCAGCCGCCAGCTTGGCAAACCACAA 28029 33 100.0 35 ................................. GCCAACGGCGCGGTGCCCGCCGGCATGCTCGGCAT 27961 33 100.0 34 ................................. ATAGAGAACACCCTCCAGCCGCTCGCGCTCAACA 27894 33 100.0 35 ................................. GGGAAGTGCGGAGGCCATGCCCCTCATCACCTCGA 27826 33 100.0 34 ................................. ATCGCCGCAATCATCTGGTTGACCGTGTTGATGA 27759 33 100.0 35 ................................. ATGTTCGCGCCCTCGCTCACTTTATTCACAACGGC 27691 33 100.0 35 ................................. AACTGCGGTGCCCCGGTGGAGCTCTGCGTCGGTTT 27623 33 100.0 34 ................................. AAGGCAGTCGAGCCCGTATGTGCTGAGTATTGCC 27556 33 100.0 34 ................................. TTTTTACAATCGTCAATCCTTCGGCGTGTCTTGC 27489 33 100.0 34 ................................. CACAACAGCTTGGCGGTGGCCGTCGAACTGGTCA 27422 33 100.0 35 ................................. CACTTGTCCGTGCCTGTGGTGTCCTTGCTGGCGGT 27354 33 100.0 33 ................................. TTATGCAACTGCCGGAACACCTGACGGTTAGCG 27288 33 100.0 33 ................................. GACATCCAGTTCCCGCGCATCAGCGTACTGGTG 27222 33 100.0 36 ................................. AACTTCCACAATCTCCGGGGGGAGCGTGGAGAGAAG 27153 33 100.0 35 ................................. CTCGACCCAGCACACGTCTATGCCCTCGATGGATT 27085 33 100.0 32 ................................. AGGACTCGCTTAATGAAGCCGGGTGCGGCCTG 27020 33 100.0 34 ................................. GACTGCTCCGCCCGTGGGTTCGCGGCGGCGGGTG 26953 33 100.0 36 ................................. GATCATGAGTGGGGGGGGGGAGACGGTATTTTGCAA 26884 33 100.0 34 ................................. ATGGCCGTAATCATCTGGTTGACCGTGTTGATGA 26817 33 100.0 35 ................................. ATCACCCTGTGTGGTATAGTTAATAACAACAACGG 26749 33 100.0 36 ................................. GCCCGGGTAGATCAGCGACGGGTTGCCCGACCGGTA 26680 33 100.0 32 ................................. ACAAGCTCGTCGGCTTCGGTCTGGTCGAGCTT 26615 33 100.0 33 ................................. GTCACGGACTCCAGCGCACAGGCGGGAACCCGA 26549 33 100.0 34 ................................. CACCAGTTCGCGCCGCCCTTGATCGTCCCCGTAT 26482 33 100.0 34 ................................. TTTGTGATCGTGCGGCGGTCGAGTCCGGTCTTGC 26415 33 100.0 34 ................................. AGATTCTGCGCCGGTGGTGGGGGTAGATTCTGCG 26348 33 100.0 35 ................................. GGCATGATTGGTGTCGCACACATGCTATCATGAGT 26280 33 100.0 35 ................................. AGGGTTGACTGTGCGCCGTAATCGTGTGTGATGAA 26212 33 100.0 34 ................................. CAGCTGGATAAGGCGGATGTCCCGTATCGCATTA 26145 33 100.0 33 ................................. TCTTGAGTGAGGCCATTGGTCCTGTCCTTATTC 26079 33 100.0 33 ................................. TGTTTGAATTTACGGTCATGCTTAACAGTGTAC 26013 33 100.0 33 ................................. AACTCACATCCTACCGTGCGAAAACTCGAAGCC 25947 33 100.0 34 ................................. ACCCCGTGCGCGCTGTTCACGACCGATGCGGGTA 25880 33 100.0 33 ................................. CAGCATGAGAGTCTGCATATCAAACATGAGGTT 25814 33 100.0 34 ................................. ACTTTCGGTACCGACCCGACCGAGATCGAGATCA 25747 33 100.0 34 ................................. ATCTATAGCAACAAAGCACGTACGCCATTGGTGC 25680 33 100.0 35 ................................. ATATATGACATATCGTTACAGTGGCCCGCGTTGAT 25612 33 100.0 36 ................................. ACCGGTTTGCGGGTCGGTGACGCGGGGCGTGGTATC 25543 33 100.0 34 ................................. ACACTCATAGGAGGGGCCGTGGCAAAACGTAAAA 25476 33 100.0 34 ................................. CACCGATCAACCGTATTATAAAACTCCTCCAGCG 25409 33 100.0 35 ................................. ACCGAATCGACCAGCGAATTAAAATCGGACTGCAA 25341 33 100.0 35 ................................. CGGTACGCGACAGCTATCAACGACAACGACAACGG 25273 33 100.0 35 ................................. ACCTTGCGGGATCGTACCGGGTGGCTCACCGGCCG 25205 33 100.0 33 ................................. ACGACTACCAGCAACAAACCACCATGGAGGAAT 25139 33 100.0 33 ................................. ATGAGGTTGTTGCGGAACCGCACCCATGCCGAA 25073 33 100.0 34 ................................. GATTTGAGTTCCGTTATTGGTAATGGTTATATGT 25006 33 100.0 36 ................................. ACGGTTTGCGTGTTGGTGCGTATCGTCGTTTCCGTC 24937 33 100.0 35 ................................. TCGTACACCGTATATTCGTGCCCGCGATAGCTGTA 24869 33 100.0 35 ................................. GCTGTTGTGTTGTCAGCGTCGAGGCGCTTTGTCGT 24801 33 100.0 35 ................................. ATGCGACTTTTCGCGTCAGAAATTAAGTTAATCCA 24733 33 100.0 34 ................................. CGCGACCAGATAGGCCAGTGGATACCGGCAGGCT 24666 33 100.0 34 ................................. TCGTACGTGACATGACACTTGGTCACGATCATGT 24599 33 100.0 33 ................................. CCGGCGGCCAGTGCGGACGTCGCATTGGTCGAG 24533 33 100.0 34 ................................. ATCCAGTCGGTTGAATATGTCAACGCGCATACTA 24466 33 100.0 34 ................................. AGCAGAACATCGCGAACAATAATCTGAACGGCAT 24399 33 100.0 34 ................................. GTATTGTGCGTCGTTATATGCATCATCTCGCCAT 24332 33 100.0 33 ................................. AAGATCGTCCGCGGCGGCTGCCGCTATGGCCTC 24266 33 100.0 32 ................................. TCGATGAATGTGCGCTCTGCCTGTTGGGCGTT 24201 33 100.0 34 ................................. GAGCCGATTTGCTTGATACCCTCCCAAGCCTGCC 24134 33 100.0 33 ................................. TATTCGGCGCTGGTGAACCGCATCGGCGGCACC 24068 33 100.0 32 ................................. TGCGTCATGTCGTCGGAGCGTTTGAGCATGAT 24003 33 100.0 34 ................................. AGATATCCGGTGCCCGTGTACTGCCATGCGACAG 23936 33 100.0 34 ................................. CAGGAGATCGCGGGCTCGTGTCCCGTACCATTGC 23869 33 100.0 33 ................................. TGGACAGTAAGTTTCGTACGCTGATCGGCTGTA 23803 33 100.0 34 ................................. AGGAAATCGCGGGCTCGTGTCCCGTACCATTGCA 23736 33 100.0 34 ................................. AGGAAATCGCGGGCTCGTGTCCCGTACCATTGCA 23669 33 100.0 35 ................................. TGAAGCCGGATACCGTCATGATGTCCTCATAGCGC 23601 33 100.0 34 ................................. TGCATGAGGCTGGCCTGGAGCAGGTCGGGGTCGA 23534 33 100.0 35 ................................. CGTATCGAATGGGGCGGATCAGAACCACTCGAAGC 23466 33 100.0 34 ................................. GAGGCGGCGAACTCGCTCAACCTCCGCAATCCCG 23399 33 100.0 35 ................................. ACCGAAATCAAACCGAAGGCAAAGTGAGGAAATCA 23331 33 100.0 34 ................................. GTATCGTGCAAGACTTTGCGTGCGGTGTTGGCCG 23264 33 100.0 33 ................................. AGCAAGGCCGCGCGACTGCGCACCGGAAGGGAC 23198 33 100.0 36 ................................. AGTAACTTGAGAGTTCGCAAGGGCACGTGTTTCGCG 23129 33 100.0 34 ................................. AGCTTGTTGTCATCCCTTGTGATGGCGAAATACG 23062 33 100.0 34 ................................. AAGTTCGCCGTTTTCCGTCACGCAATAATCGGCC 22995 33 100.0 34 ................................. ATGGCCGTGGTGCAAAACATCATCGGTGTTTTGC 22928 33 100.0 34 ................................. ACCAAGGCCGCGCGGCTGCGCACCGGAAGGGACT 22861 33 100.0 34 ................................. ACGGCCTCGTACAAGCTGCCCCCGGAGTTGCCGC 22794 33 100.0 33 ................................. AGGCGAGTGGCATTTGTTACCGAGTTCGCGCCT 22728 33 100.0 33 ................................. TTCAGTACTCAGGCCGTTATCAATTCCGATTGC 22662 33 97.0 35 ...............A................. TCCAAGGTGGGCTCGTCGGCCAGCAGTTCCGCCAA 22594 33 100.0 34 ................................. TTGGCCTCCACAACGGTGATGATCTGGTCTTTAG 22527 33 100.0 34 ................................. ATGAGCGTTACATCATTGTCGCAATCGGCCGTTA 22460 33 100.0 36 ................................. TATTATTCTGTCAAAATAATTTGCCGCTACATCATT 22391 33 100.0 35 ................................. CTTTGCGGTGGCATCGTCACGGTGTTGGGCGTGCT 22323 33 100.0 33 ................................. ACGATGGCGAGGCGCAGCGCGGCGCACATGCTC 22257 33 100.0 34 ................................. AAGGCAGTCGAGCCCGTATTTGCCGAGTATTGCC 22190 33 100.0 34 ................................. TGCGATCCTATTACGGATCCACCGTCAAAGGGCA 22123 33 100.0 34 ................................. AGCCCACTTTGGACTGTCAGCATAAACAACTATG 22056 33 100.0 35 ................................. ACCGGTTTGCGGGTCGGTTACGCGCGGTATCGTGT 21988 33 100.0 35 ................................. AGCAGGGCCGCGCGACTGCGCACCGGAAGGGACTA 21920 33 100.0 33 ................................. TGAGCGAGTCGTTCGGGGTGGACATGGGAGCGG 21854 33 100.0 34 ................................. CCGCTACCCCTATACAGCGTGTGGCCGTACACGC 21787 33 100.0 35 ................................. TATTGCGGTTATGTCGGTTTTGTTTGTCACGGCTT 21719 33 100.0 34 ................................. ATCGATGGGCGGCGCTTGCCCGTAAAATTTGTTA 21652 33 100.0 34 ................................. ACCAGAGCCGCCGGATTCGTCTCGATATGCTCAT 21585 33 100.0 34 ................................. TTGACGGCCTCGCCCGCGGCGTGCACGCCGGTCT 21518 33 100.0 35 ................................. CATACCACCTCGACGGGTGCATCCAGATATCGCGC 21450 33 100.0 35 ................................. TCGGCGGCGTGAAAGATGCCATCTCCGGCGTGAAG 21382 33 100.0 33 ................................. CACCGCGCGTAAGGCACCTTGAAGCCGACCTCC 21316 33 100.0 33 ................................. CTCGCGAACAGCGGCAAGCCAATGGTCAACGGA 21250 33 100.0 34 ................................. ACCTCCAAAGGGGCGCGGCCAAGCACGAAATCGG 21183 33 100.0 35 ................................. AGTGTCTGGTCGCCGTGTGCGTCGGTGGTGAGGCT 21115 33 100.0 34 ................................. GTGAATCGGAGCAGCGTCCCGTCCTTCATCAGCG 21048 33 100.0 35 ................................. GCTCACGTACCACGGTAGGGCGCGGCGTCTCTGTG 20980 33 100.0 35 ................................. ATCGAAAACACCTTGCAGCCGATCGCGCTCAACAT 20912 33 100.0 33 ................................. ACAAGTTCGTCGGCTTCGGTCTGGTCGAGCTTG 20846 33 100.0 32 ................................. TGCAAGCGCGATACGGTCAGCAACTCCGGGGG 20781 33 100.0 32 ................................. AGGCGATGATCGGCATGTACGCGACGTTCGGC 20716 33 100.0 34 ................................. TTCAGCTCGGCCCCGTTGGACTGGAGTTTGTCGA 20649 33 100.0 34 ................................. CGGCTGGAGGATTTCGCGCACGCCGAGGTAGTTG 20582 33 100.0 35 ................................. ACCGAGGACGAGTGGAAGCGGACACAAAGGCTGTA 20514 33 100.0 33 ................................. CACAGCAGCTTGGCCGTGGCCGTGCTGCTGGTC 20448 33 100.0 32 ................................. GTCCAATGTCCGCCCGGCTCCCAGTCCAACAC 20383 33 100.0 33 ................................. AATGTGGTGTTGGGCGTCCATTCCGCCCAAGAA 20317 33 100.0 36 ................................. CTGAACTCCTCATACCAGTGCTCCACCAGAGGCGAC 20248 33 100.0 34 ................................. TGCTCGCCCGAAGTCAAGTCCGCACTCGATGTTC 20181 33 100.0 35 ................................. AATGATATGTGTTTCGGCAGGGGCGCATGATGCAT 20113 33 100.0 34 ................................. GGCTTTGCCGGATCCGCTTCCATCGGCAACGGTT 20046 33 100.0 34 ................................. CGATATTACGATCCGGCATGTGCTCGTAATCGGC 19979 33 100.0 36 ................................. AGCGATGCGTGGAGCGCGGTCAAGAACGGCGTGTCG 19910 33 100.0 36 ................................. ACCAGTGCCTTGAGCACGTCCTTGGAGACCGCGAGG 19841 33 100.0 34 ................................. GCGTCACCGAAGATCAACGCGCCTTTTTCGCCGC 19774 33 97.0 0 ........T........................ | ========== ====== ====== ====== ================================= ==================================== ================== 129 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTCGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGGCGTTCGCACCATGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGGATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGTG # Right flank : GAAGCGCTGCTGAAGGAAGTCAGGGCCGTGATCGACAATCCGGACGTCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGATTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGACCCCGACACTCCCGGTACGGATGGCCCGTCCAAGCCCGGAGCCGGCGACACGGATACGGACAAGCCCGGCAACAAACCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACCAACCCAAGCCTCCGCTGTCGGCGACCGGCGCGAACATGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCACCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCGATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGGAATCCGAACACTTGGCGGAACGATGTCGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //