Array 1 431594-435343 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBMC01000001.1 Corynebacterium propinquum strain HSID18034 NODE_1_length_595696_cov_164.661975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431594 29 100.0 32 ............................. AAGGTCTACCAAGATCGCCCCATTGGCTACCT 431655 29 100.0 32 ............................. AAAATCCACTTCACAGAGCTAACCCCCTACCT 431716 29 100.0 32 ............................. CCTACGTAAAGAGTCGCCTTTAGTAATGGCGC 431777 29 100.0 32 ............................. CGGGCACACCAGAGTATGACGAAGCCTTGGAC 431838 29 100.0 32 ............................. ACCTGCCGCAAGGAACACTGCTAATGACAACG 431899 29 100.0 32 ............................. CGGCTGGCCCGCATCATTCGAGTGCTCAATCG 431960 29 100.0 32 ............................. TACAGACACCGTGATTCACGTTGCTAACGCCT 432021 29 100.0 32 ............................. CTTATTCGCGATGTGCTCGTTTTCTTCCGGCT 432082 29 100.0 32 ............................. GGTACAGCTCGGCCCCATTGCGGGCATACGAG 432143 29 100.0 32 ............................. ATTGCGCTGCTTGAATGGGGCATACAGCCCGG 432204 29 100.0 32 ............................. GGTATTCCGGTTATCGAAGTAATCGACTTACG 432265 29 100.0 32 ............................. GCGCTGGAAGCAGCGAGGAAACGCCAGTTGGC 432326 29 100.0 32 ............................. TTTTGGGCCCATGACGGGTAGCTTGCGTGTGG 432387 29 100.0 32 ............................. AGCGCGGTGATATAGCCACGCTCCGAGAATCC 432448 29 100.0 32 ............................. TGGATTCGTAGCTTGGTCTTACACCAATGCAG 432509 29 100.0 32 ............................. CATGAAAATGACCGTGCATTACACCGATGGCA 432570 29 100.0 32 ............................. CCGATTGAGCGTTATGCCGTCGGGATTAAACA 432631 29 100.0 32 ............................. TTTGAATAACTCCGGGTTTTTACCCACTTCCA 432692 29 100.0 32 ............................. GGGTAAATCTTTCGCTCGTACCAGCCCCAGTG 432753 29 100.0 32 ............................. CTAATCTCGCCTAATTCAATGTTCGGGCTTTT 432814 29 96.6 32 ............................T AACCCGGAATACTTGAAGCTGCTGGGCGTAGA 432875 29 100.0 32 ............................. CCCGGCTATGCCGCTTATCCCACGCGCCAAAT 432936 29 100.0 32 ............................. CGGTGGAGCAGTTAATGAGGTCACTGGAGCTA 432997 29 100.0 32 ............................. CTGTTCTCCGGTTACACAGTGTGCAGCGGTGG 433058 29 100.0 32 ............................. TCGCTTAAATGGGCGGCGGCAACGAACCTGGT 433119 29 100.0 32 ............................. CCCCGCCTCAGCGATTTCAGGTCGCGTTGACG 433180 29 100.0 32 ............................. ATGCGTAGCCGCGTGTGCCATTGTCGACGGCA 433241 29 100.0 32 ............................. CACACGGGTAGAGCCTGACGTGATTCCTAGCC 433302 29 100.0 32 ............................. CTCAGCCCATCTCACCGCAGTTGCGCTAGTAG 433363 29 100.0 32 ............................. GCGCCATGAGGGGCTAGACCACGTACACGCAC 433424 29 100.0 32 ............................. CTGCGGAATAGTTTTAGCCCGCATCGCCCGCC 433485 29 100.0 32 ............................. TACGCTTATCGGAATTTCTTTCGCTACGGGCG 433546 29 96.6 32 ............................T TGAGTGATATCGACGTTTGTGCTCACCACAAA 433607 29 100.0 32 ............................. TCCGGTCGATAAAGATGCCACGGATACCGATT 433668 29 100.0 32 ............................. GAAACAGCCAGGGGCTGTGACATTGCGGGCAT 433729 29 100.0 32 ............................. GTTGTTTTAGGCACCAAACCAGTCTGCTAAAA 433790 29 100.0 32 ............................. AAGAAACTCATCGCCATTGCGTTCCCACATCA 433851 29 100.0 32 ............................. TTCGAGCCGGTTGGCGTGCGAGTTCCAGGCGA 433912 29 100.0 32 ............................. AAGCTATTACCGGAAATTGCAGCCCAGCTCGA 433973 29 100.0 32 ............................. GGTTGCCGCAATCGCCCTGCTACCCATCTTGC 434034 29 100.0 32 ............................. GCATACTTCAAAGCGAAAAACAGTAATGACGC 434095 29 100.0 32 ............................. AAGCTATTACCGGAAATTGCAGCCCAGCTCGA 434156 29 100.0 32 ............................. ATGGCGCGCGGAATACCGCCGATAAGACCGCC 434217 29 100.0 32 ............................. CAAGCAATTAGGCTTCACCGCGCTGCAGCCCG 434278 29 100.0 32 ............................. TTGCTCCACGACCGGCCCGGAAATATCCGACG 434339 29 100.0 32 ............................. ACCAGAGACGGATTAGCCTGACGCTGTGCATC 434400 29 100.0 32 ............................. TCTGCTGGATGATTTCGCGCGCCTAGAAAAAA 434461 29 100.0 32 ............................. CATTTTTTGCCCCACGCTTGTTGTCTCCAGTG 434522 29 100.0 32 ............................. TTGTCAACTACGCGTTGTATTATCTTGCGCTT 434583 29 100.0 32 ............................. ATCCGACGGCGATCAATCCGAGCAATCAGCAT 434644 29 100.0 32 ............................. ATCCGACGGCGATCAATCCGAGCAATCAGCAT 434705 29 100.0 32 ............................. CAGCATCCGGCTGACGTGGGCCTGGCATTGCG 434766 29 100.0 32 ............................. CTTTTTCTGCACCTGGATTTTCCACTCTTTCT 434827 29 100.0 32 ............................. GGTGGGCCGCCAACTGGCGACGTACACATTCG 434888 29 100.0 32 ............................. GGCACCTGCTGCCATGAGGTCATAGAAGCGGT 434949 29 100.0 32 ............................. CCTGGTGCATGCTGCAACCCCGGGTGCGATCA 435010 29 96.6 32 ............................G AATTGCACTGACTGTAAGTTCAGCGGTGTAGG 435071 29 96.6 32 .........A................... TACGCGGGCGATAAGGCCGATATTCCAACCGA 435132 29 100.0 32 ............................. ACGTGATGAATGGGAATTTTTTGTGGTCTCAT 435193 29 96.6 32 .................T........... ATTCATCGTGGGAAAAGACCACGGCCATATCG 435254 29 100.0 32 ............................. CTGGTACAGCGCTAGTCATTGATAGAGGTGCC 435315 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 62 29 99.7 32 CTCTTCTCCGCGCATGCGGAGGTAATTCC # Left flank : GTCGTCGCGTCAGAACGGAGATTCACGGAAATCAAGTTCTCAAAGAGATGTTGTCTACGCTCATGCATATTCTGGAGCCGCACTTACCCGCACGCGATGATGACCGGCTAGTAGCAGGGCGCGGTGACGAGGTTTTGGGGCATACTCAATATGGGAAAGATAAATAAATGTTTTTAGTATTGACTTCTACTTATCTTCCTGACCATCTGCGCGGGTATTTGAGCAGATTCCTGATAGAGGTGGATCCCGGTGTTTATGTCGGCAATATCTCTCGCAGGGTGCGCGACAATATTTGGAAGCGCTGTGCCGAAGCAATCGATCGCGGCAGCTTAACCATGATCAACAGCGATTCCAGTAGAGAGCAAGGATTCGCTGTTAACACTCTTGGTCCGCAGCGCAAAAATATAATAGACTTAGATGGCATGTTGTTACCCGCGACCTTATCGGCTGTAGCGTCACAAAACGACGCCAACCGCTAAAGTTTCCGCAGGTAACGCAGT # Right flank : CACTCACCTGGGCTACTCGAAATGTTGGACACTTAGACTTCAATGATCCTCACTTTGTCGTGAACTACGTAAAACAAGACGCGCTATTGCCACGGCCCCCGCGACTGGAATTTCACGCGCAAGGCAAAAACGTAGAAGACCCTGATTATTGGTTTATGCCCAATGATTCAACTTACGCTGATTTACGCTGGACGGAACACGCTAAGTTGCTGAAAGAACTTGGATTTATTGAACAGCCGCTGGCTAAACCGATCAAGGGCGAAATTTCATACAGTGGCCGCCGTGGCTGGAAAGTGACACAAGAGCTAGCTTGGGCCTTGCAAAACCTTAGCGTCAACTAGGCTTTTCACGCATCACCCTGCGAAGATTGATCAGATCGGTTAATGATGCGGTATAGCATCGCTCTAGATAGGCCAGTTCGTCGGTGCAGTTCCATTTTGGAAACCCCGGCATTAACGGCGGCATCAATCGATTGGTAATAATCATCGCGCGCGCTAGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCATGCGGAGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 130034-129396 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBMC01000003.1 Corynebacterium propinquum strain HSID18034 NODE_3_length_172501_cov_182.147667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130033 28 100.0 33 ............................ CCATTAGCCATCTCCGCGAGGTGCTTAGCTTGC 129972 28 100.0 33 ............................ CGTTGAACCCGGCCCGCTTGTGGTGGAATTCCA 129911 28 100.0 33 ............................ CAGGCCCGTGACGCGGCCCGGGGGCATGCTAGT 129850 28 100.0 33 ............................ GAGCGAATCAAAAGGGATACCGAAGCCTAGGCA 129789 28 100.0 33 ............................ CAGATCAGCAATATCTGTGACACCAGCCTGGCC 129728 28 100.0 33 ............................ GATGTTGGATGTGGCTAGGCAGATCGCGCCTGC 129667 28 100.0 33 ............................ GAAGTCCCGGGATTTGTTGAACTCGTATTTGGT 129606 28 100.0 33 ............................ CCTTGGATTGACGAGCCGCTTTGATTGCGTACC 129545 28 100.0 33 ............................ CGCCCGTGAACGTTTCCCAGTTCGATTTTATTT 129484 28 100.0 33 ............................ CCCGGGAGGTTGACTGAATGCCAAACGCCGACG 129423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 GTTTTCCCCGCGCATGCGGGGATGAGCC # Left flank : TATCGAATACGGCGGCAGCTGTGCAGGCACTGTCGACAAGATGTTGTGGAAGATTGAGGTAGCCAGATTCGTCGCCAGATTTTGCCCACAATGATTTCGCTTGGTGGCTTTTGTTCGTCACCCACGATTCCATGTTGTTTGCAAAATCAATTGTAGATTTTGGCAAAAATGATGTGGTGTCCATTTGGCTCTTTCGTTAATGCTAATTACGTGCTCTACTTTTCAGTAGTAGCAAGTTCTGGAAATTGCTGCAACTTATATCCCCTTGTAACCTTATCAAGTAAGTTGTGAAAAAACACCGAATCGTATTCTGGGCGTCTGTTGAGCTGCGGCTTTTGGAATATTAAATTGAAGGATAGCCCCGCAGTGGCGGGGGTGAGCCTTTACTTGATAATGGTTCTAATTTTTCCCTGCGCTGGCGGGGCTTTATATCAGTAATCGTGCGTGATAAGTTATATCTAATTGGCTCGAATGCTCTGTGTTGATCCAGGTCAGCGAGT # Right flank : CCGGGCGCTTCGTAAACCGGTTTTTATCGCGCCCCATACAGCCGGTAGCAGTGATGGCGACATTGACGAAAGGCCACAGGTACAGGTGTGGCGAGACAATCGAAAGGAAGAAAAATAATTATGGAATCTAGTGAATTTCGCGTACTCCGCATTGCGCTGGGGCTATCGGCCCAGGATGTGGCTAATGCGTGTTATGTGAATGTGAGGACTGCGCAGCGGTGGGAGACAGTGAATAAGCCCCCGGCTGATGCTGCTGAGTGGATTTCGGGCAAGTGGGAAAAAATGGTTGAGCGCGCGGATGATCTTATCGCCGAGGTGGAGCGCAGTGGTCTGCTGCCTTATTTTTATGATAATGCGCGGTGCCGTGAGCGTACGGGCATGAGGGCGTTTGAATACCAGACGTTGCTTGGCCATGTGAAGATGGAGCTTACACGGCGGGGTGTGGTTTTTGAGTTCGTCGAGGCGTGAATTTAATTCTTCTCCCCAATTTGCAATGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 885-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBMC01000135.1 Corynebacterium propinquum strain HSID18034 NODE_135_length_917_cov_1.026582, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 884 28 100.0 33 ............................ GTCCGAGCACGGCCCCGGCGGCGGCTTGGAATA 823 28 100.0 33 ............................ CCTTTACGACGAAGTCTGGGGCAGCCCTTGCTC 762 28 96.4 33 .....................C...... GACTCCGAGCGGCACATGGAGCAGGCGGCGGCA 701 28 92.9 33 ...G.......T................ TTCACGGAATTATACTCAACGCGCCAATCGAAC 640 28 100.0 33 ............................ GGCAGAGTTTTTCGCGCGCGGTAGTGCCCTCCT 579 28 96.4 33 ..G......................... GTACTCTATGGACGGCGACGTTGAGATCCTGCT 518 28 100.0 33 ............................ TTGCATTGTGTAGGGCTTGCCATCACCACATTA 457 28 100.0 33 ............................ TCGGTCATCGACAACTTGGGTTGCTCCATCTGA 396 28 96.4 33 ......T..................... CCACACCGGGTCGAGCTAATCCGCCTGTGAATC 335 28 92.9 33 ...............T.......T.... CCTCATTCCGGGTCAGGGCTGTGGTGGCCTTAT 274 28 100.0 33 ............................ CGGATCATTGAAATCGTGTCCATACAGCACCGG 213 28 100.0 33 ............................ TCATGTCGGCCGGAATGCTTGGCCGGGTTTCAA 152 28 100.0 33 ............................ CGAGGACTTTAGGGCCTCGGTTGACCGGACTGT 91 28 100.0 33 ............................ CTCGAATACGGCGACGAGACGGTATACCGAATG 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 33 GTTTTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGAGATTGATTGCCGCGTCTGCAATTCAAGC # Right flank : CGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //