Array 1 93998-92627 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWC01000117.1 Escherichia coli strain A425 NODE_15_length_102443_cov_80.4172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93997 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 93936 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 93875 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 93814 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 93753 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 93692 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 93631 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 93570 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 93509 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 93448 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 93387 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 93326 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 93265 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 93204 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 93143 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 93082 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 93021 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92960 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92899 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92838 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92777 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92716 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92655 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18351-16735 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWC01000097.1 Escherichia coli strain A425 NODE_2_length_559487_cov_86.1599, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18350 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 18289 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 18228 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 18167 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 18106 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 18045 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 17984 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 17923 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 17862 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 17801 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 17740 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 17679 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 17618 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 17557 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 17496 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 17435 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17373 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 17312 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 17251 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 17190 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 17129 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 17068 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 17007 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 16946 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 16885 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 16824 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16763 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //