Array 1 253036-253979 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGVT010000004.1 Escherichia coli strain PLATE1_C11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253036 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 253097 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 253158 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 253219 29 96.6 32 ............T................ ATACAAACGCGGTGTTTATCAATATGAATTTT 253280 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 253341 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 253402 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 253463 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 253524 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 253585 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 253646 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 253707 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 253768 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 253829 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 253890 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 253951 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269497-270991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGVT010000004.1 Escherichia coli strain PLATE1_C11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 269497 29 100.0 32 ............................. CCCGTCGATGACCTTGCCGAACGGGCTGAACG 269558 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 269619 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 269680 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 269741 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 269802 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 269863 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 269924 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 269985 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 270046 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 270108 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 270169 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 270230 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 270291 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 270352 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 270413 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 270474 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 270535 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 270596 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 270657 29 100.0 32 ............................. ACGACGTTTTTTTTGAAGACATTTTGATTTCT 270718 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 270779 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 270840 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 270902 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 270963 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //