Array 1 2046-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRNP01000087.1 Lachnospira eligens strain AF42-3BH AF42-3BH.Scaf87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2045 30 100.0 36 .............................. TCAGACGAATTACTGGAAGTATTAAGAAGTGACGCA 1979 30 100.0 35 .............................. GATGAAAGCTACATTAAAAGCACTGAAAGAGTTTA 1914 30 100.0 36 .............................. AGAAGCACTCCTTACTAAAATACCCCTAATATTTTA 1848 30 100.0 36 .............................. AAAGATTATGAATCTAGCGGAGAAGCTCGGCTCTGG 1782 30 100.0 34 .............................. GGTGTACTACCAGACTACTACGAGTGATGAACAG 1718 30 100.0 37 .............................. GCTCAATCTTGGCAGATACAGCAGAGCCTAATGTTAA 1651 30 100.0 34 .............................. ATTAAACGATGATTTTAAAAGAAGATATGTTAAA 1587 30 100.0 35 .............................. ATTTCTCCCATAACTGTAGCTGCCATACGCTTACC 1522 30 100.0 34 .............................. ACGACAATCGGGTTAAACTCGTCTTTATTAAACT 1458 30 100.0 34 .............................. TTACATGCCGTTTCTTTCGTAGTGCGCGCTACAA 1394 30 100.0 35 .............................. TGAGCAGTATTTGTTACAGAAAATGGAACATAAAG 1329 30 100.0 33 .............................. TTTCCCCCTTAACCATAAACAGAAACGCAATGT 1266 30 100.0 35 .............................. GCAAAGAAAGCTACGCTATCCCTTATGGGATTTGA 1201 30 100.0 34 .............................. ATATATTTTCGATTTCTGTTCTATGATTATATGG 1137 30 100.0 36 .............................. GAAAACTGGCGCACCCAACAATAGGGTATCCATATG 1071 30 100.0 37 .............................. TGGCGAATATGACAAAGAAACTAATATGCAGGATAAA 1004 30 100.0 36 .............................. ATATTTATTACAGAAGTTTGAGCAGAAAGAGTTTGC 938 30 100.0 35 .............................. TGGGACAATAACCTAATGCACACGATATTCCGCGC 873 30 100.0 36 .............................. AAGTGGTGATTCATTATGGACTATTGTAAAAAATTA 807 30 100.0 35 .............................. CCAAAAATGCTATTGAATTCTGCAATTCCTTTTTG 742 30 100.0 35 .............................. CCTTTTATAGACTTAAAAATATTGTCTATTGCACT 677 30 100.0 36 .............................. AGTACGCGCATATGTGCGCGTGTGTATGTGTGTATA 611 30 100.0 35 .............................. CAGCATTTGTAAGACCATAAAGCTCTCCTTCGACT 546 30 100.0 34 .............................. TATGTTCCAGCAAAGAGGTATATCTTATCTTCTT 482 30 100.0 34 .............................. CCCAATCCGATAGTACCACTTGCAATCATTGCAG 418 30 100.0 35 .............................. ACATTTGATACGAGTAAGGCAGGCACACCAAGTTG 353 30 100.0 36 .............................. AATCTACACAAATGAATATCTTTTGAAGTGCAGCAA 287 30 100.0 35 .............................. CAATATGGCTCAATCTGCTAAATCCCAAGCCGATT 222 30 100.0 36 .............................. AAACCAAAATGGCGGTGCATAGTGAAAAATTCTATC 156 30 100.0 36 .............................. TAAAGGCGAACAAAAATATGATCTTACAATTGACCT 90 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 31 30 100.0 35 GATTAACATTAACATGAGATGTATTGAAAT # Left flank : GAAGGCGCAATAAATGCAATGATTATCAGAGGTATGCAGAAATTAATTATCTGATTGAGAATATATTTCAGAGTTACAACGATATTCAAAATGGCGCGTGAAAATGAATTGCCATCAGTTGAACTTAACAGTAGTCCCACCATGACGCCGGCAATAACGCCCACAAGCAATTTGAACGGCAGGCTGCGAAAAAAACTATTTTTCTTCATTTAATAAATCTCCTTCATTGGTGTAGTTAATAAAAATTATAATATAGGCCGGAGAAAATAACAATGGAAAGGTTTGGGGGATTAATATAGATGAGTTTTGTTAATTAGATTATGCAAGTATTTACCAGGTGATATATAAGGGGATTCTCTAAAAAACCAGTAAATACCTGAAGTTAGAGGCTTATTTGTCTCGTGGTAATAAATAAATTAATTGGCTGGTATTTTTGGGGAAAATGGACTAAAATAGGCAATGAGAGATTTAAGCATGATTGAAAAGGCTTAAATTCGTTG # Right flank : TTTGTAATAATTGCGTAAACTAAATACAGGAATCTGATTAACATTAACATGAGATGTATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 1218-78 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRNP01000137.1 Lachnospira eligens strain AF42-3BH AF42-3BH.Scaf137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1217 30 100.0 36 .............................. AACGATATATGACCCTTATGATTTGGAGTGCAGTTT 1151 30 100.0 34 .............................. TGGTAAGAGAACGGGAGAAGTTAATTCCCATAGC 1087 30 100.0 34 .............................. GCAGAGTGCAGTGTTAAGTGAATGCTACAACTCA 1023 30 100.0 35 .............................. TAAGAATATAAAAGGACTACATAATGGTTATTCTG 958 30 100.0 37 .............................. CTAATGTGTCAAGCCTCGTCCCATCTTTCAGGTTGGG 891 30 100.0 35 .............................. TAAGTTGACCGAATGGCAACAAACAGATTGCCGCC 826 30 100.0 36 .............................. TATAGCTTTTTATACTCTATACCGCTGCCATAGAGC 760 30 100.0 37 .............................. AAGATTGGGTAAAAAGGAGAAAAAAATAATGAACACT 693 30 100.0 35 .............................. CCAAGAACCTTTGTTAATCTTTCAGTGTCGTGTGT 628 30 100.0 35 .............................. AGTTTCTTGTTAATTTCATCCTGAACATCTAAATT 563 30 100.0 34 .............................. TTCCATGTCTGCTTATAGACTGCATCCACAACAC 499 30 100.0 35 .............................. CAGAAAACTATGATACCACAACCACGAATGGAAGA 434 30 100.0 36 .............................. TCCGTTCAGGCGGTCGGCAAGGTTCGACGCCCTGCG 368 30 100.0 36 .............................. AAGACTACTGTTGTCTTTCCAGCAAGCAGCGAGCTG 302 30 100.0 35 .............................. ATGAATCTGTATATAAGATAAAGTAGAGCGACAAT 237 30 96.7 36 ................G............. CATTTTCCTGTCTGCTTTGTATGCTCGTTAATCTTA 171 30 100.0 34 .............................. GCCCAATCTACCGGGCAATTATCAGGTCCCCAGA 107 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.8 35 GATTAACATTAACATGAGATGTATTGAAAT # Left flank : AACATGAGATGTATTGAAATTAAGAATATAAAAGGACTACATAATGGTTATTCT # Right flank : TATTATATTTTCTATGTGAACTTTTATTTATACATCTTAAGATTATTAATATTTAAAGAAAAAACCAGAAAGTTTGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //