Array 1 5-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVR01000041.1 Ligilactobacillus salivarius strain FHNXY27_L3 Scaffold41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 .................................... AGCGAGCGTATCTAACAATGGTATCTCACT 71 36 100.0 30 .................................... GGCTCAAAAAGTTATCTGGGGTGCGTTCTT 137 36 100.0 30 .................................... TAGCCGGGCAGTATAAACAAGCATTTTTCC 203 36 97.2 30 .................................G.. GTAAGTCTAATAACGAACTAAACGCAACTT 269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : TTAAG # Right flank : | # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 45121-45948 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVR01000004.1 Ligilactobacillus salivarius strain FHNXY27_L3 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45121 36 100.0 30 .................................... GACAAAAGCAATTAGAGAATCTACCTAGTT 45187 36 100.0 30 .................................... AAGATACGTTACTAATGTTGTCAATTCCTA 45253 36 100.0 30 .................................... AAGGAACCGGCATAATATACCCGATCTCCA 45319 36 100.0 30 .................................... AGTAGCTCAAGGTATATCTGGTGCAATTTC 45385 36 100.0 30 .................................... TAACTTGGCTTGTATTAAAAAGAGTGTGAA 45451 36 100.0 30 .................................... TTGGACTTTGATAGGTTTATCTGTATTAGG 45517 36 100.0 30 .................................... TATTGTACAGCTAAGAATTCTTATTTTGCT 45583 36 100.0 30 .................................... CGTTGAACATATAGTTAAATGTGCCCAATG 45649 36 100.0 30 .................................... TTAGAACCTTTGGTGCGTCGCTTAAAACTT 45715 36 97.2 30 ...................................G CGTTGAGCATATAGTTAAATGTGCCCAATG 45781 36 97.2 30 ............G....................... TTAGAACCTTTGGTGCGTCGCTTAAAACTT 45847 36 100.0 30 .................................... TCGGTCTGGAATTGAATTTAACGCTATTAA 45913 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CAGCGAGCGTATCTAACAATGGTATCTCACTGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCNTGTCTCAATGCTCGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGGCCGTAAGTCTAATAACGAACTAAACGCAACTTGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCCAATCATAGATTTTATAAAAACATTGTTAAGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCAGATGTTTTAACGTTTATCAACTACAACAGGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCAGATGTCGGTGGAATATAGCCCATGAACTGGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCCCTACTTCTTTTTTATTAATCGCATTATTGGTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACCTTAACCATCGCTAACATTGGTCGAGCTACTGTTTCAGAAGGATGTTAAATCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //