Array 1 41538-38270 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWB01000005.1 Vibrio cholerae strain VcCHNf2 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41537 28 100.0 32 ............................ CAAAGTTTATGTTTTGTTTGTTTGGTGTTAGA 41477 28 100.0 32 ............................ TCTCACGCGCGGGGCAAGATGGCAACCTTAAC 41417 28 100.0 32 ............................ TTCATGGTGTACGGAAGTGCATAAGTCTTGTC 41357 28 100.0 32 ............................ ACTGTTTAAAAGGCGTAACATCATTTTACTTC 41297 28 100.0 32 ............................ TTGTGGGTAGTAGTCATATAAGTCACTCGCCT 41237 28 100.0 32 ............................ ATCAACCAAGAGGAGTGCTCTTCGTATTACGC 41177 28 100.0 32 ............................ GTTAAACCGGACGCTACCGTAGGCAGCTAGGC 41117 28 100.0 32 ............................ CATAACTACCGTTCCAGCTCGTGTAAGCCCAT 41057 28 100.0 32 ............................ TGTGGTTGCGGACGACGCGACAAGCGAAGTCG 40997 28 100.0 32 ............................ GTTCATGGTGTACGGAAGTGCATAAGTCTTGT 40937 28 100.0 32 ............................ TATACTGGCGCACCATGCGCTCAACACGTCTA 40877 28 100.0 32 ............................ ATGAGGTGTGCTTCACGCTCTCGACCGTCCAC 40817 28 100.0 32 ............................ TTTTTCAGTGGCCTTTTCAATTTCTTTTTTGT 40757 28 100.0 32 ............................ ACTGGCTGCGCTGGATTCGGGATAGTGTTTAC 40697 28 100.0 32 ............................ TTCAAGAGCTTGCGACCAGTCGAGATGGCCGA 40637 28 100.0 32 ............................ TTTTCTTGGCACATGATAGTGATTAGTCGTCG 40577 28 100.0 32 ............................ TTCAAACTCCTCCATCAATGCCGTTTTTACCG 40517 28 100.0 32 ............................ CCAATCTCTGCGAGCCATTATTTTGAGTCCTC 40457 28 100.0 32 ............................ TGAAAAACCGTCTTGATGTACGCCTGCGTAAA 40397 28 100.0 32 ............................ TCAAGCGCTTTCAGAAAGTTTGATACATCGTA 40337 28 100.0 32 ............................ TGCATGGGTACAAACAAAGCGCCGCATTCCCC 40277 28 100.0 32 ............................ TTATCCAAAATCTCTAAGAGCAGTTCGACAGG 40217 28 100.0 32 ............................ TGATACGCCAAACAAGCAATGGGTAAACAAAC 40157 28 100.0 32 ............................ AAGATATGTCGAGTGATGAAATCGCCGAAAAG 40097 28 100.0 32 ............................ TAAAGAATGGCTAGCTACTTGGAAAAAGGTTT 40037 28 100.0 32 ............................ TTCTTTACTTGCGGCATTAGCTACCCGTGTTG 39977 28 100.0 32 ............................ TGACGCTACCGGAATTTTTTGATTGATTGACG 39917 28 96.4 32 ...T........................ AGTAATGAGCATTAACGGCGGCTCAGATAATG 39857 28 100.0 32 ............................ TAGAAACAGGCGGCCTCAATGGTCGCCGCAGC 39797 28 100.0 32 ............................ TTTTTGCTTTCTGGCGCGTTAGAGAGCGTTAC 39737 28 100.0 32 ............................ TGAAACTCTTGCAATGTTAGATATTGCGGCAT 39677 28 100.0 32 ............................ CATATCAAGCAAGCGCTCGATGGTTTTAATTG 39617 28 100.0 32 ............................ AATACTCCATCATCGCTCAGCGCTTTGGTGAT 39557 28 100.0 32 ............................ TCAAGCCCACAACTACATTCCAGATCTTGAGC 39497 28 100.0 32 ............................ TCTTGCTTTAGAAACTCGCCGTTCTCTTTGCG 39437 28 100.0 32 ............................ TCCCCATACTTAATGCGCTCTAAATGGCCGAT 39377 28 100.0 32 ............................ ACTGCAGCGCCGTGTCGATTAATGTCCATGCC 39317 28 100.0 32 ............................ TCAAGCATCGCCGCCGTGACTTTACCCAAGTC 39257 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 39197 28 100.0 32 ............................ TTGCTACCATCGAGCTAACACTGAGAGCCGCT 39137 28 100.0 32 ............................ TCATGATGGGATTGGCCGCTGGTGTACGCTTT 39077 28 100.0 32 ............................ TGAAAAGAAAGTGCTGATCGGTTCGCCAAACG 39017 28 100.0 32 ............................ GTACCACGTAAAATTGCCCGCGATAATATCCG 38957 28 100.0 32 ............................ AGATAGCCCAGAAGTCAAAGCCATGACCAAGC 38897 28 100.0 32 ............................ ACCAGGAGCATTAATACTACCGATAGTTGTTC 38837 28 96.4 32 ...........T................ TTTGGGCTAAATTCGCGTCCAGTAGGTGTTAT 38777 28 96.4 32 ...........T................ ACTTGTCTCTGCCGCCTCTAGCAAATACCTAT 38717 28 96.4 32 ...........T................ GCCAACTGTACCCACTGCGGCAATTGCACCAC 38657 28 96.4 32 ...........T................ TGTTCAATCCAGAGCAAGCAGCGATAAGGTTA 38597 28 96.4 32 ...........T................ ACAAAGAAAAAACCCGGAGCGAATCCAGAAGG 38537 28 96.4 32 ...........T................ GCGATGCCGGACAGTAGCGCGAACTCTTGAAG 38477 28 96.4 32 ...........T................ TAATGCGCCGTGAGTGGTCAAATCAGACAAAA 38417 28 96.4 32 ...........T................ ATTTGGGGAAAGGTGGTTTCTGTTTGGGAAGT 38357 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 38297 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 55 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //