Array 1 237992-241032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBJH010000006.1 Phocaeicola dorei strain PtFSb6 NODE_6_length_290664_cov_33.1887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 237992 47 97.9 29 ...A........................................... GATTTAAAACCTTAACACCACCAATCATA 238068 47 100.0 30 ............................................... CATCTATTAGTACAATGGCGGTAGTTATAA 238145 47 100.0 30 ............................................... TTCTTTTTGTTCACCGTTGGCATCAGCGTA 238222 47 100.0 29 ............................................... CTTTTCCCATTGAGAATTGCTATAAAAGT 238298 47 100.0 30 ............................................... TATGAACCCGATCTGGGGGATTCTTGGGTA 238375 47 100.0 30 ............................................... AATAGAGTTTACAATTACGAGAATGAAGTA 238452 47 100.0 30 ............................................... TCCATTCTTTTATAAATTCAAGTTTGTACC 238529 47 100.0 30 ............................................... CCATAGATGCAAGAGAACGACCGATATCGG 238606 47 100.0 29 ............................................... ACAACCTCAATCTTAGAATAACCAACCGC 238682 47 100.0 30 ............................................... TGCGCCTCTTGAGCAGAAACCAAACGGCCA 238759 47 100.0 30 ............................................... TGGGGGGAGTTGACTTGACAACAATTCCAT 238836 47 100.0 30 ............................................... TGCGATTCTTTTTGGCGCTGATGATACAGC 238913 47 100.0 30 ............................................... TGCGATTCTTTTTGGCGCTGATGAGATAGC 238990 47 100.0 30 ............................................... TCACCTTCGCTAAATGTCTCACCCTTTTCA 239067 47 100.0 30 ............................................... AAAATGATATCTTTTCATTGGTATATTTAT 239144 47 100.0 30 ............................................... AGAATACAGATTTTGAAAAATGGGAATTCT 239221 47 100.0 30 ............................................... AGATAGATCGGAATTAAGACGGAGATTCGT 239298 47 100.0 30 ............................................... TCACCTTCGCTAAATGTTTCGCCCTTTTCA 239375 47 100.0 30 ............................................... TCCTGCCTTCTCTTAAAAAGGAAGATGTGC 239452 47 100.0 30 ............................................... TTGCCATCTTGAGTTGATTTAACAGGTTCG 239529 47 100.0 30 ............................................... CGATGGGCGACGTGAGGTTCGCATCATAGT 239606 47 100.0 30 ............................................... AACAGTTGCTTTCTGATTTTGCCTGATTAA 239683 47 100.0 30 ............................................... GCTTTTCTTTTGGAGGATTTGGGCGTTCCC 239760 47 100.0 29 ............................................... AGTTAGACGGAGAACGTATGGAAGATGTG 239836 47 100.0 30 ............................................... GTAAACGCAAGGCGGCCACGCCGGAAAAAC 239913 47 100.0 30 ............................................... CCGGCAGGTGAACGGGGTTATCAAAAACTC 239990 47 100.0 29 ............................................... TCCAAAATGTAGACCTCTACCACTTCCTC 240066 47 100.0 30 ............................................... CAAATCTTCACGACCAACTTTTACCAAAGC 240143 47 100.0 30 ............................................... CAATCCTTGCTTGCAGTTCCGGGGTTATCA 240220 47 100.0 29 ............................................... CTCCAAAATGTAGACCTCTACCACTTCCT 240296 47 100.0 30 ............................................... GAAACCCTAATTGTGTACATCATAGACTGT 240373 47 100.0 30 ............................................... CACTGATGCTTTGACAAAAGAACAATGGAC 240450 47 100.0 29 ............................................... CCATGATAAAGTTTATATTTTAATGGTTC 240526 47 100.0 30 ............................................... GGCACCTCTTTTGTAAAAGTGGAAGGAGGT 240603 47 100.0 30 ............................................... CCCTATAAATTATTTATATCTCATTGATTA 240680 47 100.0 30 ............................................... CGCCACCGTCCGGCAGTTCGCATACGAGCA 240757 47 100.0 30 ............................................... CCATTCCTATGGCTTGCCTCGTAGCTTTCG 240834 47 100.0 29 ............................................... GTCCTGGTCTGATCCTCCAGTTCGGCCAC 240910 47 100.0 29 ............................................... ACACTTTTTTGTGGAATATAAAAAAGGGG 240986 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 40 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 163367-162806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBJH010000009.1 Phocaeicola dorei strain PtFSb6 NODE_9_length_207562_cov_36.0234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 163366 33 100.0 33 ................................. TGCAGATCGCTTTACTCCATACGATGATAAGAA 163300 33 100.0 32 ................................. ATGTTACATTAAAAATTGATTATTAATGAATG 163235 33 100.0 32 ................................. ATGTTACATTAAAAATTGATTATTAATGAATG 163170 33 97.0 33 ................................T TGCGGAAGAGAATTTCATATCGGAAGAGAATTA 163104 33 97.0 33 ................................G TGTGAGAGGTGGACGTTATCTAAGGAAGAAGGA 163038 33 97.0 33 ................................T TGAACGTACTGAAGATGTCAATCGTCGTGGCTA 162972 33 100.0 34 ................................. TTAGCAATACTGTCCCAGTGATTACGATTGTTCA 162905 33 97.0 32 ................................C GTCCACTGCGGAAGACGGGCAGTTCTACTGGA 162840 33 84.8 0 ..........G.......A.A.......G.G.. | AA [162822] ========== ====== ====== ====== ================================= ================================== ================== 9 33 97.0 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAACTGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACACTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTCCAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //