Array 1 20190-21057 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWUV01000019.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA1 IPC41_19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20190 28 96.4 32 ........T................... TGCATCCAGAAGGGGGCCGAGGTGATGTTCAA 20250 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 20310 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 20370 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 20430 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 20490 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 20550 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 20610 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 20670 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 20730 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 20790 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 20850 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 20910 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 20970 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 21030 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGAGAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCAGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30979-29931 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWUV01000019.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA1 IPC41_19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30978 28 100.0 32 ............................ GGACGGTTCCTTGACCAGGGTCACCAGGTCAC 30918 28 100.0 32 ............................ TTACAGCCGCCGGTAAGACCCGAGCCGCCAGT 30858 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 30798 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 30738 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 30678 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 30618 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 30558 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 30498 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 30438 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 30378 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 30318 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 30258 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 30198 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 30138 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 30078 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 30018 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 29958 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 209818-208711 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWUV01000012.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA1 IPC41_12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209817 28 100.0 32 ............................ TGGTCGTTGATGGCGTAGCCTGCTCCGAATTG 209757 28 100.0 31 ............................ CGCACGTGCGGAGGCGGGATATGGGCGGCCG 209698 28 100.0 32 ............................ GTATTCGATGAGGACAGCGGGCTGCTCGGGAT 209638 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 209578 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 209518 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 209458 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 209398 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 209338 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 209278 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 209218 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 209158 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 209098 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 209038 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 208978 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 208918 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 208858 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 208798 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 208738 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //