Array 1 92778-94332 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCIL01000014.1 Escherichia coli strain 1520e_R12 NODE_14_length_112010_cov_20.753081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92778 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 92839 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 92900 29 96.6 32 ........T.................... AAAATAAATGATAATCAGACGGTTAGCAACGT 92961 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 93022 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 93083 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 93144 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 93205 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 93266 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 93327 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 93388 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 93449 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 93510 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 93571 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 93632 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 93694 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 93755 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 93816 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 93877 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 93938 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 93999 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 94060 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 94121 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 94182 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 94243 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 94304 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9043-10291 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCIL01000016.1 Escherichia coli strain 1520e_R12 NODE_16_length_102945_cov_22.126904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9043 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9104 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9165 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9226 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9287 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9348 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9409 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9470 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9531 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9592 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9653 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9714 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9775 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9836 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9897 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9958 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 10019 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10080 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10141 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10202 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10263 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //