Array 1 63218-64283 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJX01000165.1 Salmonella enterica subsp. enterica serovar Infantis strain 88sa NODE_2_length_124403_cov_6.90135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63218 29 100.0 32 ............................. CATCACCGCTGAACATCTTGAAGAGTTGTTTG 63279 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 63340 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 63401 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 63462 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 63523 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 63584 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 63645 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 63706 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 63768 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 63829 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 63890 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 63951 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 64012 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 64073 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 64134 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 64195 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 64256 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80566-82649 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJX01000165.1 Salmonella enterica subsp. enterica serovar Infantis strain 88sa NODE_2_length_124403_cov_6.90135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80566 29 100.0 32 ............................. CAGAAACTTAGACAAACTCAGGCTCCTGATTA 80627 29 100.0 32 ............................. ACCACTGTCCACAGTCTGTCGGCGAACTACCG 80688 29 100.0 32 ............................. GCACTGGCGCAGAATTACGCCAAATCGCAGGG 80749 29 100.0 32 ............................. CGCCCGCTGGTGGCAGCGTACCGCCGCCGGGA 80810 29 100.0 32 ............................. GCTTGGTAATTACTATGCCGAGCTTATCAAAC 80871 29 100.0 32 ............................. AATCCACATATGTGAAACTCCAAGGAGGTTTG 80932 29 100.0 32 ............................. GCCGTTACTGAGCGCAGCGGGTTAGAGGTAAA 80993 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 81055 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 81116 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 81177 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 81238 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 81299 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 81360 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 81421 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 81482 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 81543 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 81604 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 81665 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 81726 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 81787 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 81848 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 81909 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 81970 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 82031 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 82092 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 82153 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 82214 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 82275 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 82336 29 100.0 11 ............................. CGGCCAGCCAT Deletion [82376] 82376 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 82437 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 82498 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 82559 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 82620 29 93.1 0 A...........T................ | A [82646] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //