Array 1 48357-47291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLZ010000022.1 Chromobacterium vaccinii strain HSC-77S12 NODE_22_length_72459_cov_23.723345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48356 29 100.0 32 ............................. TGCTTGGAGTGGAAAGCGACTATGCCCTGGCC 48295 29 100.0 32 ............................. AGGCCGAATTCGCATTTGATCATTATTTGCAT 48234 29 100.0 32 ............................. TCCGCGAGGCCTCCAAGCCACTGACCGGCATG 48173 29 100.0 32 ............................. TCTCGTTCGGTCATGAGGCGTTCAATTAGATC 48112 29 100.0 32 ............................. GTTACCGGACATGGCTGATTTCGATTCTGCGT 48051 29 100.0 32 ............................. ACGGTTTTTGCGAATTGCGTGTACATAGCACA 47990 29 100.0 32 ............................. TTGACCGGCGGCAAGCGGATCGTCGACGTGCT 47929 29 100.0 32 ............................. GCCAACCACGATAACCAGGTGCAGCGCGCCCG 47868 29 100.0 32 ............................. TCTGGAATAAACGGGAAATTATTGGCGTGCAA 47807 29 100.0 32 ............................. CAGGCCGCCCAGCACCACGCCGATGTGCAGGC 47746 29 100.0 32 ............................. TAGCCTGCGCAGTAGCTTCCAGATCATCTCGC 47685 29 100.0 32 ............................. GATAATTCGGCTATGTCGTCTATCAACTTTCA 47624 29 100.0 32 ............................. TTCTGGCGGCTCGCGTTATACCGCGCTGCTGC 47563 29 100.0 32 ............................. TACCAGCGCGCCGTCCGCATCGAGCTGCCGGA 47502 29 96.6 32 .....G....................... TCGGCTGGCGCACTTGCATCACGTCCGCCGTC 47441 29 96.6 32 ...........A................. ATGACGGTCACCAGCAGGCCGCCGACGGTGTG 47380 29 93.1 32 G..........A................. CATGGCGCCAGGGCTCAATAATCGCAGCCATG 47319 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGAGGGGGTGGAAGACGGCAACGCGGTGATGGCCTGGCAAGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCGCCTGTACCGGAAGAGAGCAGTGAATAGCATGAGGATCGCTTTGTTCCAGAGGGCGATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTAGCGTTTTTGTTTTTCAAAATCAATTGCTTGCAATTGGT # Right flank : GATGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCACCCGCTAAAGACCGCATGCGCGCGCGCCACGCATGGAAAGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTAGAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCGTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGTTGGGCAGCGGGGTGACTTTTTCCGCGTTGTTGATCTCCCCTCGCTGGCGCTGGCCGGCCATCCTCGCCGGCGTGTGGCTGGGGTCGGTGATCTGGGGCATGGTTGCGCATGGCCTGAGTCCGGCGGGGGCGGCGGCTTTCGCCAGCATCGAGGTGGTCAGCGGCGCCATGGGCTGCTGGGTGGCTAGCCTGGGGCGCAACGATCCGGATACCCCGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61055-59012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLZ010000022.1 Chromobacterium vaccinii strain HSC-77S12 NODE_22_length_72459_cov_23.723345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61054 29 100.0 32 ............................. TCGGCTGAAACGCATACTCATAAATTCCAAAT 60993 29 100.0 32 ............................. CGCGAGAACGGCAAGCCGATCACCATGACCAT 60932 29 100.0 32 ............................. GGCATGTGAAAACCGCTGAATCATTCCTTACT 60871 29 100.0 32 ............................. TTCCTGATTATCTCCGGCCTATCGAGCTGGTT 60810 29 100.0 32 ............................. GTCGCTGTCGCTGCTGTTGCCTCCACCACTGC 60749 29 100.0 32 ............................. TGCACCTGCGTCACCCAGCAGGGCACCGCGAT 60688 29 100.0 32 ............................. CAAGGGCTGCGTTTCTGAGCGGAAAAGAGCTA 60627 29 100.0 32 ............................. GGCAGGGAACAGGGTTGTAAATCGTCAGAATG 60566 29 100.0 32 ............................. GGCGCGGTAGGTCGCGGTTAATTCGCTCTGGC 60505 29 96.6 32 ............................A TGACATGGAATTGGGATATCGATTTCTCTCCT 60444 29 100.0 32 ............................. TCGTCCATGATCCGCTCACCGGTCATGTACTG 60383 29 96.6 33 ............................A GGCGCAGAAGGCAACGAAAGAGCCTGAATCACA 60321 29 93.1 32 ......................C.....A CTGTGCCGATAGCCCTGCCCAGTCATCCGCCA 60260 29 100.0 32 ............................. TCGGGTTTCGAGCTGGGTTCTGGATTCGGCTT 60199 29 100.0 32 ............................. GCGCTGCGGATTGCCGGCCCGGCGAGGCAAGA 60138 29 100.0 32 ............................. ACGGACGGCAGCTGCGAGGCCGAGGACATGGA 60077 29 100.0 32 ............................. CAGGCGTTTTTCTTTCGATCCTTTCCGCAGAT 60016 29 100.0 32 ............................. ATGTGGAAGGCCTTCCGCTGCTAGCCAGCTTC 59955 29 100.0 32 ............................. TTGCCAGTGCCTACACGCCAATTAATAGTTCC 59894 29 100.0 32 ............................. TGAGCGGAAAGCTGTTCCTGCACACTCTTGCC 59833 29 100.0 32 ............................. TGCGCGTGAAAACGACTGAATCGTTCCTAGCG 59772 29 100.0 32 ............................. CTCAATAGGGGATTTGAAATGGAAAAGCTCAT 59711 29 100.0 32 ............................. GCCGTTTTGCCGCTGGTCGATGAGGGCATCAT 59650 29 100.0 32 ............................. AGATAGACCGTGCCGCCATCGAATTGCGTCGG 59589 29 100.0 32 ............................. GAACGGGGGAGACAGTGCATGTTGATTCGTAT 59528 29 100.0 32 ............................. ACGCCGCTGCAGCTGTACCTGGAGAAGCGCGG 59467 29 100.0 32 ............................. GCATCTCCTGCATCTTTGCCAAATAAGTCTAT 59406 29 100.0 32 ............................. TATTCCTCCACCAGCCCCGCCGAAAATAGCCA 59345 29 100.0 32 ............................. AACCCCACGTGGCTTGAGACCGGCAAGGGCTC 59284 29 100.0 32 ............................. GGGCTGCTGGCCCTGTTGGTGGTGGGCGCGGG 59223 29 100.0 32 ............................. TGTTGGAACAGGTTTAGGCAATAAAACAGGAA 59162 29 100.0 32 ............................. AAGGTGCAAATCCGCGCCTACGGCTACAGCAA 59101 29 96.6 32 ............................T CGGGTGATCTCCACGTCCAGCGCCAGCTCCAG 59040 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.3 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : ACCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCAAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTAATCGCCAACTTCGGCCCCGCTCCGGTCCGCTACGATAAGCAAACCCTGCCACCGCAAAGCCTGCTGGCCGAGCTGGCCGGTCAGTCGTCCAGGCTGCTGCTAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCTAATGTCGTTTGCTGGCCATGGGGCGATGGTTTCCCATGGCTGGCAGACGGCATCGCCAGGTTATTTAATTGATCATTTTTTAGGCTGTAAAATCGGTAGATTTTTAGGATGAGTTTTTATCTTTAAAAATCAAAATGTTGAAATTGGT # Right flank : CTCGAAACGCCGCCGATGGATTCTGCATTCAAGTATTCCGCACCTAATGTGGGGATCCATTGCCTGGAGTCTTACCGCTATATCAGTCGTTCAAGAGTTCTCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCAATGCCGAGCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGAAATGACGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCCGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGTCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGGCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGACCGATAGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 69332-68326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLZ010000022.1 Chromobacterium vaccinii strain HSC-77S12 NODE_22_length_72459_cov_23.723345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69331 29 100.0 32 ............................. CAGATACATGTCCGGCAGCACGACCATGGACG 69270 29 100.0 32 ............................. GATCAGGGCATGGAGGCGGTGATGGCTGCTTA 69209 29 100.0 32 ............................. CACTTTTTTCGCTTCTTGCAGGTATTCGATTG 69148 29 100.0 32 ............................. ATTCAGGGCTGGTGCGGCTGCGCTTGATGTTG 69087 29 100.0 32 ............................. TAAATAGCCGCCTTAGGGCGGCTTTTTGTTGC 69026 29 100.0 32 ............................. TTTGTCCGTTCTATGCTGCCGCCGCTGCCTTC 68965 29 100.0 33 ............................. TTTCGGCCTGCATGGCCTCGGCGAATAAATGCG 68903 29 100.0 32 ............................. TGAGATCGATAGTTCGTTAACCAATTTTAGCA 68842 29 100.0 32 ............................. GACGCATACGCATCGTGGGGCGGCTACCGCGC 68781 29 100.0 32 ............................. CTGTGGGCCAATATCGCCTGCGCAGTCGGCTC 68720 29 100.0 32 ............................. AGGGCAATCTCCCCATGCAATGGGTGCTGGAC 68659 29 100.0 32 ............................. TCGGTCGCGCCATCGGTGATCACGCCCTTGAT 68598 29 96.6 32 ............C................ GTGTTCAGGTCGCGCACCTTCTTAGAAAACGA 68537 29 96.6 32 ............C................ CCGGCGGCCTCGGCTGACAGGGTGAACAGGTC 68476 29 96.6 32 ............C................ GCTCGCAGCATCTCCTGCGAGTGCAACGATGG 68415 29 89.7 32 ............C............G..A AAGCTAGTGCCTCAAGGCTTGAGGGTTCGAGA 68354 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.0 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : TTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCGAGGCTCAGCGGCTTGCCCAGGCCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCGGACCGGTGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGACCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTTGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCGGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : CGGGCGCGGGCTGGAATGGTGTCGCGGCGCTGCCAGCCCGGCTGTGTCCGGAAACAAAAAAAGCGCCCCTTGGGGCGCTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAAGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACCACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCGTCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTATCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //